JAL-4036: Jalview 2.11.2.2 and earlier no longer compatible with Uniprot REST...

Activity

CR-JAL-265 7

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    Participant Role Time Spent Comments Latest Comment
    Author 47m 1 I've now put in a warn with the e.getMessage(), but I've ...
    Reviewer - Complete 15m 6 after trying it out I think the old behaviour is better, ...
    Total   1h 2m 7  
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    Objectives

    Uniprot's new look website became live at uniprot.org 28th June 2022 - but it's rest query API is not compatible with Jalview's FTS Search API

    https://twitter.com/uniprot/status/1541797066120302597/photo/1

    There appears to be a new set of query fields https://www.uniprot.org/help/query-fields

    Stopgap is to switch to the legacy service at https://legacy.uniprot.org/uniprot/

    Branches in review

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    Issues Raised From Comments

    Key Summary State Assignee
    JAL-4050
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    General Comments

    There are no general comments on this review.
    /help/.../features/uniprotsequencefetcher.html Changed
    /help/.../releases/release-2_11_2_3.md Changed
    Open in IDE #permalink
    /help/.../whatsnew/whatsnew-2_11_2_3.md Changed
    Open in IDE #permalink
    /resources/fts/uniprot_data_columns-2022.txt Added
    Open in IDE #permalink
    /resources/lang/Messages.properties Changed
    /resources/lang/Messages_es.properties Changed
    /src/jalview/fts/core/FTSRestClient.java Changed
    Open in IDE #permalink
    /src/jalview/fts/core/GFTSPanel.java Changed 2
    /src/.../uniprot/UniProtFTSRestClient.java Changed 5
    /src/jalview/.../uniprot/UniprotFTSPanel.java Changed

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