CR-JAL-27 JAL-2443: Remove getResidueBoxColour from api.SequenceRenderer

draft for 4 years

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JAL-2443: Remove getResidueBoxColour from api.SequenceRenderer

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Number of files included: 11

jalview 0
- Folder src 0
  - Folder MCview 0
    - File AppletPDBCanvas.java 0 Remove
    - File PDBCanvas.java 0 Remove
  - Folder jalview 0
    - Folder api 0
      - File SequenceRenderer.java 0 Remove
    - Folder appletgui 0
      - File OverviewPanel.java 0 Remove
      - File SequenceRenderer.java 0 Remove
    - Folder ext 0
      - Folder jmol 0
        
        File JmolCommands.java 0 Remove
      - Folder varna 0
        
        File VarnaCommands.java 0 Remove
    - Folder gui 0
      - File OverviewPanel.java 0 Remove
      - File SequenceRenderer.java 0 Remove
- Folder test/jalview 0
  - Folder gui 0
    - File SequenceRendererTest.java 0 Remove
  - Folder schemes 0
    - File ColourSchemesTest.java 0 Remove

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Participant	Role	Time Spent	Comments	Latest Comment
Mungo Carstairs	Author
Total		0m	0

Linked Issue:
JAL-2443

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Objectives

Calls to SequenceRenderer.getResidueBoxColour are always followed by a call to findFeatureColour (unless feature display is turned off).

This logic is already encapsulated in method SequenceRenderer.getResidueColour() so it would be simpler always to use this method instead.

Remove getResidueBoxColour from the api and change all calls to it to just call getResidueColour. This method now accepts a FeatureColourFinder (JAL-2438) so it can do the feature colour lookup after the colour scheme lookup.

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CR-JAL-27

JAL-2443: Remove getResidueBoxColour from api.SequenceRenderer

CR-JAL-27 0

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JAL-2443: Remove getResidueBoxColour from api.SequenceRenderer

CR-JAL-27 0

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