JAL-2465: No mapping generated for 3D Structures loaded in Jmol via URL


CR-JAL-46 2

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    Participant Role Time Spent Comments Latest Comment
    Author 9m    
    Total   9m 2  


    I initially thought this bug was specific to Phyre2 model structures, however further tracking shows it happens for all structures and also affects version 2.10.1.

    Follow the steps below to reproduce bug:

    Jmol lunches and displays the structure - however, no mapping is generated hence the displayed structure is grayed out and cannot communicate with the alignment window.
    With Chimera, mapping is created successfully.

    Branches in review


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    /src/MCview/AppletPDBCanvas.java Changed
    /src/MCview/PDBCanvas.java Changed
    /src/jalview/.../jmol/JalviewJmolBinding.java Changed 1
    /src/.../chimera/JalviewChimeraBinding.java Changed
    /src/jalview/gui/AppJmol.java Changed
    Open in IDE #permalink
    /src/jalview/gui/AppVarnaBinding.java Changed
    Open in IDE #permalink
    /src/jalview/gui/ChimeraViewFrame.java Changed
    /src/jalview/gui/StructureViewerBase.java Changed
    /src/.../javascript/MouseOverStructureListener.java Changed
    /src/.../structure/StructureListener.java Changed
    Open in IDE #permalink
    /src/.../structure/StructureSelectionManager.java Changed
    /src/.../models/AAStructureBindingModel.java Changed
    /test/jalview/ext/jmol/JmolViewerTest.java Changed 1
    /test/.../chimera/JalviewChimeraView.java Changed
    Open in IDE #permalink
    /test/.../models/AAStructureBindingModelTest.java Changed

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