JAL-2620: Support for alternative genetic code tables

Activity

CR-JAL-76 9

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    Details

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    Participant Role Time Spent Comments Latest Comment
    Author 34m 5 Changed data file (and parser) to the format as at the ft...
    Reviewer - Complete 24m 4 (1 defect) this is unlikely to be tractable for lots of tables. We s...
    Total   58m 9 (1 defect)  
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    Objectives

    Requested by David Martin: the ability to use an alternative genetic code translation table when translating cDNA (e.g. invertebrate mitochondria).

    Branches in review

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    Issues Raised From Comments

    Key Summary State Assignee
    JAL-2936
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    General Comments

    There are no general comments on this review.
    /resources/lang/Messages.properties Changed
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    /resources/lang/Messages_es.properties Changed
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    /resources/GeneticCodes.dat Added 6
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    /src/jalview/analysis/Dna.java Changed
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    /src/jalview/analysis/GeneticCodeI.java Added
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    /src/jalview/analysis/GeneticCodes.java Added
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    /src/jalview/gui/AlignFrame.java Changed
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    /src/jalview/jbgui/GAlignFrame.java Changed 3
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    /src/.../schemes/ResidueProperties.java Changed
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    /test/jalview/analysis/DnaTest.java Changed
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    /test/.../analysis/GeneticCodesTest.java Added
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    /test/jalview/schemes/DnaCodonTests.java Deleted
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