JAL-2527: User preferences for overview window

Activity

CR-JAL-87 22

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    Details

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    Participant Role Time Spent Comments Latest Comment
    Author 25m 10 ok
    Reviewer - 100% reviewed 26m 12 Because protected so available for access in a sub-class....
    Total   51m 22  
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    Objectives

    JAL-2388 introduced the ability to omit hidden regions in the overview. The default setting should be a user preference.
    Additionally JAL-2588 raised need for two new preferences and overview settings:
    Enable/disable legacy grey/white behaviour
    Default colour for gapped positions in overview

    Branches in review

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    Issues Raised From Comments

    Key Summary State Assignee
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    General Comments

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    /resources/lang/Messages.properties Changed
    /resources/lang/Messages_es.properties Changed
    /src/.../api/AlignmentColsCollectionI.java Changed
    Open in IDE #permalink
    /src/.../api/AlignmentRowsCollectionI.java Changed
    Open in IDE #permalink
    /src/jalview/appletgui/OverviewCanvas.java Changed
    /src/.../datamodel/AllColsCollection.java Changed
    Open in IDE #permalink
    /src/.../datamodel/AllRowsCollection.java Changed
    Open in IDE #permalink
    /src/.../datamodel/VisibleColsCollection.java Changed
    /src/.../datamodel/VisibleRowsCollection.java Changed
    Open in IDE #permalink
    /src/jalview/gui/OverviewCanvas.java Changed 2
    /src/jalview/gui/OverviewPanel.java Changed 2
    /src/jalview/gui/Preferences.java Changed 6
    /src/jalview/jbgui/GPreferences.java Changed 5
    /src/.../renderer/OverviewRenderer.java Changed
    /src/.../renderer/OverviewResColourFinder.java Changed 7

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