Review
|
CR-JAL-1
|
Mungo Carstairs
|
JAL-2362 corrected lookup of residue colour
|
127 |
4 years
|
|
|
Review
|
CR-JAL-5
|
Tochukwu Charles N Ofoegbu
|
Phyre2 model import and UI prototype
|
502 |
3 years and 11 months
|
|
|
Closed
|
CR-JAL-8
|
Mungo Carstairs
|
JAL-2344: Refactor file format options as interfaces instead of text...
|
46 |
3 years and 11 months
|
|
|
Closed
|
CR-JAL-10
|
Mungo Carstairs
|
JAL-2380 fix Matrix.postMultiply()
|
2 |
3 years and 11 months
|
|
|
Closed
|
CR-JAL-11
|
Mungo Carstairs
|
JAL-2379: Improve PCA memory management
|
12 |
3 years and 11 months
|
|
|
Closed
|
CR-JAL-13
|
Mungo Carstairs
|
JAL-2379 'direct' pairwise score calculation for PCA (no encoding)
|
3 |
3 years and 11 months
|
|
|
Review
|
CR-JAL-16
|
Mungo Carstairs
|
merging Chimera spike to Jalview
|
47 |
3 years and 10 months
|
|
|
Closed
|
CR-JAL-17
|
Kira Mourão
|
JAL-2388: Option to exclude hidden regions in overview window
|
123 |
3 years and 10 months
|
|
|
Closed
|
CR-JAL-18
|
Mungo Carstairs
|
JAL-2438: Make findFeatureColour thread-safe and smarter
|
30 |
3 years and 10 months
|
|
|
Closed
|
CR-JAL-19
|
Mungo Carstairs
|
JAL-2431 show cDNA consensus after New View in split frame
|
4 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-20
|
Mungo Carstairs
|
JAL-2399 JAL-2400 tidy Text Colour wording, behaviour including Cancel
|
4 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-21
|
Mungo Carstairs
|
JAL-2401: "Lower case colour" button in user colourschemes dialog is...
|
6 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-22
|
Mungo Carstairs
|
JAL-2405: Protein specific colours enabled in selected group colour...
|
7 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-23
|
Mungo Carstairs
|
JAL-2430 colour columns hidden in alignment gray on structure
|
10 |
3 years and 9 months
|
|
|
Draft
|
CR-JAL-24
|
Mungo Carstairs
|
JAL-1608 menu entry text; enable/disable Create/Remove Group option
|
5 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-25
|
Mungo Carstairs
|
JAL-1608 menu entry text; enable/disable Create/Remove Group option
|
5 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-26
|
Mungo Carstairs
|
JAL-2435 copy font changes across split screen
|
9 |
3 years and 9 months
|
|
|
Draft
|
CR-JAL-27
|
Mungo Carstairs
|
JAL-2443: Remove getResidueBoxColour from api.SequenceRenderer
|
11 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-28
|
Mungo Carstairs
|
JAL-2386: Change Colour (All Groups) applies PID threshold but not...
|
7 |
3 years and 9 months
|
|
|
Draft
|
CR-JAL-29
|
Tochukwu Charles N Ofoegbu
|
JAL-2375 JAL-2376 First commit of implementation for Phyre2 result...
|
502 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-30
|
Mungo Carstairs
|
JAL-2385: Colour threshold slider doesn't update value when switching...
|
20 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-31
|
Mungo Carstairs
|
JAL-2383: Above PID threshold not restored from project
|
14 |
3 years and 9 months
|
|
|
Review
|
CR-JAL-32
|
Tochukwu Charles N Ofoegbu
|
JAL-1648: Remember search queries employed previously in Find and...
|
11 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-33
|
Mungo Carstairs
|
JAL-2416: Load score matrices from file or resource file
|
46 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-34
|
Mungo Carstairs
|
JAL-2398: Blosum62 C->R is 3, should be -3
|
4 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-35
|
Mungo Carstairs
|
JAL-2397: Correct PCA (Jalview/SeqSpace) and substitution matrix based...
|
9 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-36
|
Mungo Carstairs
|
JAL-2428: NJTree refactoring
|
18 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-37
|
Mungo Carstairs
|
JAL-2468 change score model in PCAModel when switching...
|
1 |
3 years and 9 months
|
|
|
Review
|
CR-JAL-38
|
Tochukwu Charles N Ofoegbu
|
JAL-2473: UI component disappear on downward resizing Jalview frames /...
|
11 |
3 years and 9 months
|
|
|
Closed
|
CR-JAL-39
|
Mungo Carstairs
|
JAL-1632: Dialog to create/edit tree calculation settings
|
46 |
3 years and 9 months
|
|
|
Review
|
CR-JAL-40
|
Tochukwu Charles N Ofoegbu
|
JAL-2482 Bugfix
|
1 |
3 years and 9 months
|
|
|
Review
|
CR-JAL-41
|
Tochukwu Charles N Ofoegbu
|
JAL-1648: Remember search queries employed previously in Find and...
|
14 |
3 years and 8 months
|
|
|
Draft
|
CR-JAL-42
|
Jim Procter
|
JAL-2432: filter/threshold annotation rows or features by percentile...
|
5 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-43
|
Mungo Carstairs
|
JAL-2476 ability to drag and drop score matrix file to desktop,...
|
6 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-44
|
Tochukwu Charles N Ofoegbu
|
JAL-2376 copied out patch from Phyre branch
|
2 |
3 years and 8 months
|
|
|
Draft
|
CR-JAL-46
|
Tochukwu Charles N Ofoegbu
|
JAL-2465: No mapping generated for 3D Structures loaded in Jmol via...
|
15 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-48
|
Kira Mourão
|
JAL-2491: Overview window and Find only scroll one panel when the...
|
18 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-50
|
Mungo Carstairs
|
JAL-2447: option to enable/disable 'experimental' options in Jalview's...
|
4 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-51
|
Jim Procter
|
JAL-2499: fix Sequence Features PCA calculation
|
14 |
3 years and 8 months
|
|
|
Draft
|
CR-JAL-52
|
Mungo Carstairs
|
JAL-2506: New Sequence Feature dialog errors with graduated colour
|
1 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-53
|
Mungo Carstairs
|
JAL-2532: Cancel in Feature Settings loses changes made in Amend...
|
2 |
3 years and 8 months
|
|
|
Closed
|
CR-JAL-54
|
Mungo Carstairs
|
JAL-2423: incorrect title in output window when exporting tree...
|
5 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-56
|
Mungo Carstairs
|
JAL-1476: warn user when no columns available to compute structure...
|
2 |
3 years and 8 months
|
|
|
Draft
|
CR-JAL-57
|
Mungo Carstairs
|
JAL-2295 status messages for Chimera attributes set and for failed...
|
10 |
3 years and 8 months
|
|
|
Review
|
CR-JAL-58
|
Mungo Carstairs
|
JAL-2504: 'New feature' from Find results has incorrect default...
|
9 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-59
|
Mungo Carstairs
|
JAL-2544: Sort by features buggy with gapped selection region
|
3 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-60
|
Kira Mourão
|
JAL-2536 Overview window sizing not subject to min size restrictions
|
2 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-61
|
Mungo Carstairs
|
JAL-2358: 'Add to viewer' sometimes offered for a closed viewer
|
4 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-62
|
Mungo Carstairs
|
JAL-2547: Sequence feature tooltips on gaps
|
2 |
3 years and 7 months
|
|
|
Review
|
CR-JAL-63
|
Tochukwu Charles N Ofoegbu
|
JAL-2465: No mapping generated for 3D Structures loaded in Jmol via...
|
33 |
3 years and 7 months
|
|
|
Closed
|
CR-JAL-64
|
Kira Mourão
|
JAL-2571 Corrected alignment width/height checks to visible only
|
5 |
3 years and 7 months
|
|
|