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State Review Owner Name Files Comments Age Due Reviewers
Closed CR-JAL-8 Mungo Carstairs JAL-2344: Refactor file format options as interfaces instead of text... 46 13 5 years and 3 months
Closed CR-JAL-10 Mungo Carstairs JAL-2380 fix Matrix.postMultiply() 2 4 5 years and 3 months
Closed CR-JAL-11 Mungo Carstairs JAL-2379: Improve PCA memory management 12 5 5 years and 3 months
Closed CR-JAL-13 Mungo Carstairs JAL-2379 'direct' pairwise score calculation for PCA (no encoding) 3 12 5 years and 3 months
Closed CR-JAL-18 Mungo Carstairs JAL-2438: Make findFeatureColour thread-safe and smarter 30 11 5 years and 2 months
Closed CR-JAL-19 Mungo Carstairs JAL-2431 show cDNA consensus after New View in split frame 4 0 5 years and 1 month
Closed CR-JAL-20 Mungo Carstairs JAL-2399 JAL-2400 tidy Text Colour wording, behaviour including Cancel 4 0 5 years and 1 month
Closed CR-JAL-21 Mungo Carstairs JAL-2401: "Lower case colour" button in user colourschemes dialog is... 6 4 5 years and 1 month
Closed CR-JAL-22 Mungo Carstairs JAL-2405: Protein specific colours enabled in selected group colour... 7 3 5 years and 1 month
Closed CR-JAL-23 Mungo Carstairs JAL-2430 colour columns hidden in alignment gray on structure 10 6 5 years and 1 month
Closed CR-JAL-25 Mungo Carstairs JAL-1608 menu entry text; enable/disable Create/Remove Group option 5 2 5 years and 1 month
Closed CR-JAL-26 Mungo Carstairs JAL-2435 copy font changes across split screen 9 0 5 years and 1 month
Closed CR-JAL-28 Mungo Carstairs JAL-2386: Change Colour (All Groups) applies PID threshold but not... 7 0 5 years and 1 month
Closed CR-JAL-30 Mungo Carstairs JAL-2385: Colour threshold slider doesn't update value when switching... 20 0 5 years and 1 month
Closed CR-JAL-31 Mungo Carstairs JAL-2383: Above PID threshold not restored from project 14 1 5 years and 1 month
Closed CR-JAL-33 Mungo Carstairs JAL-2416: Load score matrices from file or resource file 46 21 5 years and 1 month
Closed CR-JAL-34 Mungo Carstairs JAL-2398: Blosum62 C->R is 3, should be -3 4 0 5 years and 1 month
Closed CR-JAL-35 Mungo Carstairs JAL-2397: Correct PCA (Jalview/SeqSpace) and substitution matrix based... 9 7 5 years and 1 month
Closed CR-JAL-36 Mungo Carstairs JAL-2428: NJTree refactoring 18 4 5 years and 1 month
Closed CR-JAL-37 Mungo Carstairs JAL-2468 change score model in PCAModel when switching... 1 0 5 years and 1 month
Closed CR-JAL-39 Mungo Carstairs JAL-1632: Dialog to create/edit tree calculation settings 46 0 5 years and 1 month
Closed CR-JAL-43 Mungo Carstairs JAL-2476 ability to drag and drop score matrix file to desktop,... 6 2 5 years
Closed CR-JAL-50 Mungo Carstairs JAL-2447: option to enable/disable 'experimental' options in Jalview's... 4 0 5 years
Closed CR-JAL-53 Mungo Carstairs JAL-2532: Cancel in Feature Settings loses changes made in Amend... 2 0 5 years
Closed CR-JAL-54 Mungo Carstairs JAL-2423: incorrect title in output window when exporting tree... 5 0 5 years
Closed CR-JAL-61 Mungo Carstairs JAL-2358: 'Add to viewer' sometimes offered for a closed viewer 4 2 4 years and 11 months
Closed CR-JAL-62 Mungo Carstairs JAL-2547: Sequence feature tooltips on gaps 2 0 4 years and 11 months
Closed CR-JAL-66 Mungo Carstairs JAL-2589: Gap colour set in dialog is not applied 8 0 4 years and 11 months
Closed CR-JAL-67 Mungo Carstairs JAL-2570: existing SequenceGroup loses colourscheme when resized in... 2 0 4 years and 11 months
Closed CR-JAL-68 Kira Mourão JAL-2600: Alignment flickers when resized 4 13 4 years and 10 months
Closed CR-JAL-74 Mungo Carstairs JAL-2542: DBRefFetcher.transferReferences incorrectly relocates... 6 1 4 years and 10 months
Closed CR-JAL-75 Mungo Carstairs JAL-2506 relocate Uniprot binding classes, bind to UniprotFeature not... 13 0 4 years and 10 months
Closed CR-JAL-77 Mungo Carstairs JAL-2290 no update if no change of residue JAL-2547 no features on... 1 2 4 years and 9 months
Closed CR-JAL-78 Kira Mourão JAL-2611: Click-drag of visible area to allow fine adjustment 16 9 4 years and 9 months
Closed CR-JAL-81 Mungo Carstairs JAL-2624 check feature colour threshold when colouring structure 1 2 4 years and 9 months
Closed CR-JAL-84 Kira Mourão JAL-2665: NPE when selecting sequence ids and scrolling downwards 3 14 4 years and 9 months
Closed CR-JAL-85 Mungo Carstairs JAL-2608: Dispose of OverviewPanel to avoid memory leaks 5 0 4 years and 8 months
Closed CR-JAL-86 Mungo Carstairs JAL-2687: ConcurrentModificationException on closing applet alignment... 2 0 4 years and 8 months
Closed CR-JAL-90 Mungo Carstairs JAL-2728: Protein Annotation panel too high in CDS/Protein 2 0 4 years and 8 months
Closed CR-JAL-93 Mungo Carstairs JAL-2658 ensure features dropdown entries are unique 1 0 4 years and 7 months
Closed CR-JAL-94 Mungo Carstairs JAL-2524: Too wide a region can be rendered if hidden columns present 2 0 4 years and 7 months
Closed CR-JAL-95 Mungo Carstairs JAL-2643: No update on tab out of modified colour threshold field 2 0 4 years and 7 months
Closed CR-JAL-97 Mungo Carstairs JAL-2253 safer simpler resolution of identifiers using lookup... 8 12 4 years and 7 months
Closed CR-JAL-98 Mungo Carstairs JAL-2495 highlight all mapped sequences from structure pick 1 0 4 years and 7 months
Closed CR-JAL-100 Mungo Carstairs JAL-2667 tests added, update status bar and tooltip 4 0 4 years and 7 months
Closed CR-JAL-103 Mungo Carstairs JAL-2481: Performant lookup of features for rendering 10 0 4 years and 7 months
Closed CR-JAL-104 Mungo Carstairs JAL-2609: Implement fast paint of scrolled wrapped alignment 3 2 4 years and 7 months
Closed CR-JAL-106 Mungo Carstairs JAL-2523: Handle HTTP 429 response for Ensembl queries 8 0 4 years and 7 months
Closed CR-JAL-110 Mungo Carstairs JAL-2682: Sequence constructor is not thread safe 2 0 4 years and 7 months
Closed CR-JAL-111 Mungo Carstairs JAL-2727: Standalone test of memory recovery when all windows are... 11 0 4 years and 7 months
Closed CR-JAL-114 Mungo Carstairs JAL-2685: include start/end position of aligned region in pairwise... 5 2 4 years and 6 months