Index: build.gradle
===================================================================
diff -u -N -rc278f1c989d8b8facc353d36c64d713e67ab24f5 -r9e7c315c6ac828989a2d7f49dcb7e451f38df9ff
--- build.gradle	(.../build.gradle)	(revision c278f1c989d8b8facc353d36c64d713e67ab24f5)
+++ build.gradle	(.../build.gradle)	(revision 9e7c315c6ac828989a2d7f49dcb7e451f38df9ff)
@@ -204,7 +204,7 @@
   install4jDMGDSStore = "${install4j_images_dir}/${install4j_dmg_ds_store}"
   install4jDMGBackgroundImage = "${install4j_images_dir}/${install4j_dmg_background}"
   install4jInstallerName = "${jalview_name} Non-Release Installer"
-  install4jExecutableName = jalview_name.replaceAll("[^\\w]+", "_").toLowerCase()
+  install4jExecutableName = install4j_executable_name
   install4jExtraScheme = "jalviewx"
   install4jMacIconsFile = string("${install4j_images_dir}/${install4j_mac_icons_file}")
   install4jWindowsIconsFile = string("${install4j_images_dir}/${install4j_windows_icons_file}")
@@ -1575,13 +1575,13 @@
     
     def getdownWrapperScripts = [ getdown_bash_wrapper_script, getdown_powershell_wrapper_script ]
     getdownWrapperScripts.each{ script ->
-      def s = file( "${jalviewDir}/utils/getdown/${script}" )
+      def s = file( "${jalviewDir}/utils/getdown/${getdown_wrapper_script_dir}/${script}" )
       if (s.exists()) {
         copy {
           from s
-          into getdownWebsiteDir
+          into "${getdownWebsiteDir}/${getdown_wrapper_script_dir}"
         }
-        getdownTextString += "resource = ${script}\n"
+        getdownTextString += "resource = ${getdown_wrapper_script_dir}/${script}\n"
       }
     }
 
@@ -1912,8 +1912,10 @@
     'WINDOWS_APPLICATION_ID': install4jWinApplicationId,
     'MACOS_DMG_DS_STORE': install4jDMGDSStore,
     'MACOS_DMG_BG_IMAGE': install4jDMGBackgroundImage,
-    'MACOS_DMG_WRAPPER_LINK': getdown_bash_wrapper_script,
-    'MACOS_WRAPPER_SCRIPT': getdown_bash_wrapper_script,
+    'WRAPPER_LINK': getdown_wrapper_link,
+    'BASH_WRAPPER_SCRIPT': getdown_bash_wrapper_script,
+    'POWERSHELL_WRAPPER_SCRIPT': getdown_powershell_wrapper_script,
+    'WRAPPER_SCRIPT_BIN_DIR': getdown_wrapper_script_dir,
     'INSTALLER_NAME': install4jInstallerName,
     'INSTALL4J_UTILS_DIR': install4j_utils_dir,
     'GETDOWN_WEBSITE_DIR': getdown_website_dir,
@@ -1963,7 +1965,7 @@
     println("Using projectFile "+projectFile)
     if (!disableNotarization) { println("Will notarize OSX App DMG") }
   }
-  verbose=true
+  //verbose=true
 
   inputs.dir(getdownWebsiteDir)
   inputs.file(install4jConfFile)