Index: utils/checkstyle/import-control.xml
===================================================================
diff -u -N -r59cd693d999cfeb2df6981c9e26863ef4f3f30ff -r18dbee572ff61918cb5939f5f89f14d09e7a5f3f
--- utils/checkstyle/import-control.xml	(.../import-control.xml)	(revision 59cd693d999cfeb2df6981c9e26863ef4f3f30ff)
+++ utils/checkstyle/import-control.xml	(.../import-control.xml)	(revision 18dbee572ff61918cb5939f5f89f14d09e7a5f3f)
@@ -37,6 +37,7 @@
 		<subpackage name="datamodel">
 	    	<disallow pkg="jalview.gui"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
+	    	<allow pkg="htsjdk"/>
 			<subpackage name="xdb.embl">
 		    	<allow pkg="org.exolab.castor"/>
 		    </subpackage>
@@ -116,6 +117,7 @@
 	    	<allow pkg="uk.ac.vamsas"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
 	    	<allow pkg="MCview"/>
+	    	<allow pkg="htsjdk.samtools"/>
 		</subpackage>	    
 		   		
 		<subpackage name="javascript">