Index: utils/getdown/jalviewc-macos
===================================================================
diff -u -N
--- utils/getdown/jalviewc-macos	(revision 9038c9b054cee6232692f51d9370ad707a0efceb)
+++ utils/getdown/jalviewc-macos	(revision 0)
@@ -1,69 +0,0 @@
-#!/usr/bin/env bash
-
-ARG1="$1"
-
-# this whole next part is because there's no readlink -f in Darwin
-function readlinkf() {
-  FINDFILE="$1"
-  FILE="${FINDFILE}"
-  PREVFILE=""
-  C=0
-  MAX=100 # just in case we end up in a loop
-  FOUND=0
-  while [ "${C}" -lt "${MAX}" -a "${FILE}" != "${PREVFILE}" -a "${FOUND}" -ne 1 ]; do
-    PREVFILE="${FILE}"
-    FILE="$(readlink "${FILE}")"
-    if [ -z "${FILE}" ]; then
-      # the readlink is empty means we've arrived at the script, let's canonicalize with pwd
-      FILE="$(cd "$(dirname "${PREVFILE}")" &> /dev/null && pwd -P)"/"$(basename "${PREVFILE}")"
-      FOUND=1
-    elif [ "${FILE#/}" = "${FILE}" ]; then
-      # FILE is not an absolute path link, we need to add the relative path to the previous dir
-      FILE="$(dirname "${PREVFILE}")/${FILE}"
-    fi
-    C=$((C+1))
-  done
-  if [ "${FOUND}" -ne 1 ]; then
-    echo "Could not determine path to actual file '$(basename "${FINDFILE}")'" >&2
-    exit 1
-  fi
-  echo "${FILE}"
-}
-
-DIR="$(dirname "$(readlinkf "$0")")"
-APP="${DIR%.app/Contents/*}".app
-
-if [ "${APP}" = "${APP%.app}" ]; then
-  echo "Could not find Jalview.app dir" >&2
-  exit 2
-fi
-
-# check to see if $1 is set and is not start of other cli set args
-OPEN=""
-if [ -n "${ARG1}" -a "${ARG1}" = "${ARG1#-}" -a "${ARG1}" != "open" ]; then
- # first argument exists and does not start with a "-" and is not "open"
- OPEN="-open"
-fi
-
-APPDIR="${APP}/Contents/Resources/app"
-JAVA="${APPDIR}/jre/Contents/Home/bin/java"
-GETDOWNTXT="${APPDIR}/getdown.txt"
-CLASSPATH=""
-if [ -e "${GETDOWNTXT}" ]; then
-  # always check grep and sed regexes on macOS -- they're not the same
-  for JAR in $(grep -e '^code\s*=\s*' "${GETDOWNTXT}" | sed -e 's/^code\s*=\s*//;'); do
-    [ -n "${CLASSPATH}" ] && CLASSPATH="${CLASSPATH}:"
-    CLASSPATH="${CLASSPATH}${APPDIR}/${JAR}"
-  done
-else
-  echo "Cannot find getdown.txt" >&2
-  exit 3
-fi
-
-if [ \! -e "${JAVA}" ]; then
-  echo "Cannot find bundled java, using system and hoping for the best!" >&2
-  JAVA=java
-fi
-
-# don't quote $OPEN
-"${JAVA}" -Xdock:icon="${APPDIR}"/resource/jalview_logo.png -cp "${CLASSPATH}" jalview.bin.Launcher ${OPEN} "$@"