Index: utils/install4j/file_associations_auto-install4j8.xml
===================================================================
diff -u -N -r8274786b07649fc3cc2bbb4269e98c57df085dc3 -r739d51a0ee7f834923715bab90fa13b2263749e9
--- utils/install4j/file_associations_auto-install4j8.xml	(.../file_associations_auto-install4j8.xml)	(revision 8274786b07649fc3cc2bbb4269e98c57df085dc3)
+++ utils/install4j/file_associations_auto-install4j8.xml	(.../file_associations_auto-install4j8.xml)	(revision 739d51a0ee7f834923715bab90fa13b2263749e9)
@@ -19,15 +19,14 @@
                       <property name="description" type="string">Jalview File</property>
                       <property name="extension" type="string">jvp</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview+xml+zip</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -65,15 +64,14 @@
                       <property name="description" type="string">Jalview Launch File</property>
                       <property name="extension" type="string">jvl</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-Launch.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jvl+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -111,15 +109,14 @@
                       <property name="description" type="string">CIF File</property>
                       <property name="extension" type="string">cif</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="false" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-cif</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -157,15 +154,14 @@
                       <property name="description" type="string">mmCIF File</property>
                       <property name="extension" type="string">mcif,mmcif</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="false" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-mmcif</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -203,15 +199,14 @@
                       <property name="description" type="string">PDB File</property>
                       <property name="extension" type="string">ent,pdb</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="false" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -249,15 +244,14 @@
                       <property name="description" type="string">AMSA File</property>
                       <property name="extension" type="string">amsa</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-amsa+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -295,15 +289,14 @@
                       <property name="description" type="string">Jalview Annotations File</property>
                       <property name="extension" type="string">annotations,jvannotations</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -341,15 +334,14 @@
                       <property name="description" type="string">BioJSON File</property>
                       <property name="extension" type="string">biojson</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-biojson+json</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -387,15 +379,14 @@
                       <property name="description" type="string">BLC File</property>
                       <property name="extension" type="string">blc</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-blc+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -433,15 +424,14 @@
                       <property name="description" type="string">Clustal File</property>
                       <property name="extension" type="string">aln</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-clustal+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -479,15 +469,14 @@
                       <property name="description" type="string">Fasta File</property>
                       <property name="extension" type="string">fa,fasta</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -525,15 +514,14 @@
                       <property name="description" type="string">Jalview Features File</property>
                       <property name="extension" type="string">features,jvfeatures</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -571,15 +559,14 @@
                       <property name="description" type="string">Generic Features Format v2 File</property>
                       <property name="extension" type="string">gff2</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff2+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -617,15 +604,14 @@
                       <property name="description" type="string">Generic Features Format v3 File</property>
                       <property name="extension" type="string">gff3</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff3+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -663,15 +649,14 @@
                       <property name="description" type="string">JnetFile File</property>
                       <property name="extension" type="string">concise,jnet</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -709,15 +694,14 @@
                       <property name="description" type="string">MSF File</property>
                       <property name="extension" type="string">msf</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-msf+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -755,15 +739,14 @@
                       <property name="description" type="string">PFAM File</property>
                       <property name="extension" type="string">pfam</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pfam+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -801,15 +784,14 @@
                       <property name="description" type="string">PHYLIP File</property>
                       <property name="extension" type="string">phy</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-phylip+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -847,15 +829,14 @@
                       <property name="description" type="string">PileUp File</property>
                       <property name="extension" type="string">pileup</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pileup+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -893,15 +874,14 @@
                       <property name="description" type="string">PIR File</property>
                       <property name="extension" type="string">pir</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pir+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -939,15 +919,14 @@
                       <property name="description" type="string">RNAML File</property>
                       <property name="extension" type="string">rnaml</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/rnaml+xml</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -985,15 +964,14 @@
                       <property name="description" type="string">Substitution Matrix File</property>
                       <property name="extension" type="string">mat</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-scorematrix+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1031,15 +1009,14 @@
                       <property name="description" type="string">Stockholm File</property>
                       <property name="extension" type="string">stk,sto</property>
                       <property name="launcherId" type="string">737</property>
-                      <property name="selected" type="boolean" value="true" />
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">