Ben Soares

JAL-3850 fixed full class name

JAL-3850 using reflection for SimpleHttpFileServerFactory

JAL-3594 Updated the Jalview Develop getdown splashscreen image with Geoff's license free photo

Merge branch 'develop' into improvement/JAL-3830_macOS_bundle_wrapper

JAL-3248 Moved old README to doc/old_README and put pointers in new README for deskopt application building and JalviewJS building

JAL-3248 Archived old README. Added new README to point user to doc/building.md

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    /doc/old_ant_build_README
JAL-3743 Fixed NullPointerExceptions happening with linkCheck task when gradle >= 6.6

JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

JAL-3743 JAL-3745 Fixed NullPointerExceptions happening with linkCheck and jalviewjsTranspile tasks when gradle >= 6.6

JAL-3833 Allow setHiDPI and setHiDPIScale to work more usefully in real life

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3833 cap the scaling used by HiDPISetting for incorrect DPI values or incorrect height/width values

JAL-3830 Improved jalview.bat to find either pwsh.exe or powershell.exe, and give better messages to the user

JAL-3830 BAT file wrapper around powershell, so jalview works in command prompt. Added install4j option for installer to add Jalview's bin dir to Path in Windows. Added install4j option to create symlink to bash script to user's local bin (first of ~/bin, ~/.local/bin, ~/local/bin, ~/opt/bin that exists. First two of these usually automatically in PATH).

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    /utils/getdown/bin/jalview.bat
JAL-3830 Follow all SymbolicLinks in Windows powershell wrapper

JAL-3830 delete channel.props and channel.propsv when uninstalling

JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 refactored/simplified LaunchUtils code

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    /src/jalview/util/ChannelProperties.java
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    /src/jalview/util/LaunchUtils.java
JAL-3633 new getdown jars

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3633 getdown reads jalview_properties for proxy settings

JAL-3830 Moved wrappers to bin/jalview.* and make a symlink bin/jalview. Install4j script now jalviewg

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    /utils/getdown/bin/jalview.ps1
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    /utils/getdown/bin/jalview.sh
JAL-3503 Changed decimal display of memory in Prefences

JAL-3594 Making default .jalview_properties file separate. Now .jalview_nonrelease_properties

JAL-3503 missed a widget being disabled

JAL-3503 New getdown version and jar files

    • binary
    /getdown/lib/getdown-launcher-local.jar
JAL-3503 Added a Startup tab in Preferences, with gui for JVMMEMMAX and JVMMEMPC settings. Allowed jalview.bin.Launcher and getdown to read/use these memory settings at launch. Added channel.props to getdown appdir, used to determing correct .jalview_properties file. Refactored MemorySetting a bit, with more helper methods for the Preferences tab.

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    /resources/lang/Messages.properties
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    /resources/lang/Messages_es.properties
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    /src/jalview/bin/LaunchUtils.java
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JAL-3830 Allow paths to start with '~'. Make path check more succinct.

JAL-3830 Now using a single universal bash script (jalviewc) for bash in linux, macos, cygwin and WSL. It keeps things together.

JAL-3830 add the windows bash script to getdown files and install4j installers

JAL-3830 bash script that works in both cygwin and WSL (Windows Subsystem for Linux)

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    /utils/getdown/jalviewc-windows