Bob Hanson

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  • First commit 18 June 2018
  • Latest commit 18 June 2020
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Commits: 0 374

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Bob Hanson is mapped to 2 committers over 1 repository
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Thursday 18 Jun 2020
5:00 pm

Bob Hanson

JAL-3659 unnecessary duplication -- test is made in previous block

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    /src/jalview/bin/Jalview.java
4:57 pm

Bob Hanson

JAL-3446 unintentially left training message in code.

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    /src/jalview/bin/Jalview.java
Wednesday 17 Jun 2020
12:23 am

Bob Hanson

12:22 am

Bob Hanson

JAL-3659 proper headless check; skips setProperty for JS
JAL-3659 proper headless check; skips setProperty for JS
12:09 am

Bob Hanson

JAL-3659 proper headless check; skips setProperty for JS

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    /src/jalview/bin/Jalview.java
12:03 am

Bob Hanson

JAL-3662 simple fix for CLI not using right format for output of alignment.
JAL-3662 simple fix for CLI not using right format for output of alignment.
12:01 am

Bob Hanson

12:00 am

Bob Hanson

JAL-3662 simple fix for CLI not using right format for output of alignment.

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    /src/jalview/bin/Jalview.java
Tuesday 16 Jun 2020
1:51 pm

Bob Hanson

Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into Jalview-JS/develop

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1:44 pm

Bob Hanson

JAL-3446 -- YEIKS! two checkURLLinks calls!

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    /src/jalview/gui/Desktop.java
12:23 pm

Bob Hanson

JAL-3446 proper call for headless state

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    /src/jalview/util/Platform.java
5:23 am

Bob Hanson

JAL-3446 CommandLineOperation test

- cleaner headless check when adding JInternalFrame to Desktop

instance.

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    /src/jalview/gui/Desktop.java
4:07 am

Bob Hanson

JAL-3446 CommandLineOperation test

- headless check must be before Desktop.getInstance(), as you can't

make an instance of JFrame() when headless.

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    /src/jalview/gui/Desktop.java
4:05 am

Bob Hanson

JAL-3446 CTRL-DOWN check for headless operation

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    /src/jalview/util/Platform.java
Monday 15 Jun 2020
6:55 pm

Bob Hanson

Merge branch 'Jalview-JS/develop' of https://source.jalview.org/git/jalview.git into Jalview-JS/develop

Options
6:54 pm

Bob Hanson

JAL-3657 SwingJS HashMap.putEntries() coding mistake.

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    /swingjs/SwingJS-site.zip
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    /swingjs/timestamp
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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
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    /swingjs/ver/3.2.9-j11/timestamp
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
Sunday 14 Jun 2020
4:10 am

Bob Hanson

JAL-3445 BSML BBB file format.

- merge of BSML test branch.

- includes BSMLFileTest

- preliminary; does not read complement

- See Jalview-JS/develop/temp/bbb.dtd.pdf

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    /src/jalview/io/FileFormat.java
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    /src/jalview/io/IdentifyFile.java
    • binary
    /temp/bbb.dtd.pdf
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    /test/jalview/io/FileFormatsTest.java
3:42 am

Bob Hanson

JAL-3653 SwingJS support for indeterminate JProgressBar

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    /swingjs/SwingJS-site.zip
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    /swingjs/timestamp
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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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Saturday 13 Jun 2020
10:37 pm

Bob Hanson

JAL-3487 Splash screen

- cleaner code, more comments

- adds SwingJS support for 1-ms image finalization

(using JSToolkit.dispatch instead of invokeLater

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    /src/jalview/gui/SplashScreen.java
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    /swingjs/SwingJS-site.zip
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    /swingjs/timestamp
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
6:30 pm

Bob Hanson

JAL-3487 Splash screen

- JS now uses StateMachine

- simple example of how StateMachine works.

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    /src/jalview/gui/SplashScreen.java
3:41 pm

Bob Hanson

Merge branch 'Jalview-JS/develop.JAL-3445-BSML-reader' into Jalview-JS/develop

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3:30 pm

Bob Hanson

minor changes

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    /src/jalview/bin/Jalview.java
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    /src/jalview/gui/AlignmentPanel.java
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    /src/jalview/gui/JvSwingUtils.java
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    /src/jalview/viewmodel/ViewportRanges.java
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    /swingjs/SwingJS-site.zip
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    /swingjs/timestamp
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    /swingjs/ver/3.2.9-j11/SwingJS-site.zip
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    /swingjs/ver/3.2.9-j11/timestamp
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
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    /test/jalview/gui/JvSwingUtilsTest.java
3:03 pm

Bob Hanson

JAL-3446 from applet -- reload; also fixes some repaint issues
JAL-3446 from applet -- reload; also fixes some repaint issues
2:58 pm

Bob Hanson

It is not clear what ap.validate() is supposed to do here. Setting a preferred height does not invalidate anything. So what is there to validate? Suggestion is: if (ap != null && ap.isValid()) ......

It is not clear what ap.validate() is supposed to do here. Setting a preferred height does not invalidate anything. So what is there to validate? Suggestion is:

if (ap != null && ap.isValid())
...
if (!ap.annotationScroller.getVerticalScrollBar().isVisible())
ap.annotationScroller.getVerticalScrollBar().setVisible(true);

...

where the check for isValid() is to make sure the panel's peer has been created, and that it has been laid out, preventing the scrollbar from being shown initially.

2:31 pm

Bob Hanson

Friday 12 Jun 2020
3:02 pm

Bob Hanson

JAL-3446 SwingJS update

-fixes desktop frame not taking focus when clicked, so not processing

menu shortcuts

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    /swingjs/SwingJS-site.zip
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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
2:32 pm

Bob Hanson

JAL-3664 shortcuts in Desktop not working from AlignFrame

- missing test for JInternalFrame in JComponent.processKeyBindings

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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
9:45 am

Bob Hanson

JAL-3446 removing mouse button test debug

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    /src/jalview/util/Platform.java
7:12 am

Bob Hanson

SwingJS upgrade fixes AlignmentPanel keyPressed not called

- ContentPane was getting the message, not JInternalFrame

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    /swingjs/ver/3.2.9/SwingJS-site.zip
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    /swingjs/ver/3.2.9/timestamp
6:31 am

Bob Hanson

JAL-3446 from applet -- reload; also fixes some repaint issues

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    /src/jalview/gui/AlignFrame.java
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    /src/jalview/gui/AlignmentPanel.java
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    /src/jalview/gui/AnnotationPanel.java
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    /src/jalview/gui/IdCanvas.java
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    /src/jalview/gui/PaintRefresher.java
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    /src/jalview/gui/SeqCanvas.java
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    /src/jalview/gui/SeqPanel.java
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    /src/jalview/io/FileLoader.java
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    /src/jalview/io/VamsasAppDatastore.java
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    /src/jalview/project/Jalview2XML.java
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    /src/jalview/util/jarInputStreamProvider.java