Tochukwu Charles N Ofoegbu

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  • First commit 03 October 2014
  • Latest commit 14 June 2017
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Tochukwu Charles N Ofoegbu is mapped to 2 committers over 1 repository
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Wednesday 14 Jun 2017
1:25 pm

Tochukwu Charles N Ofoegbu

JAL-2136 New Phyre2 branch + attempt to resynced with develop

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    /resources/lang/Messages.properties
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    /src/MCview/AppletPDBCanvas.java
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    /src/MCview/PDBCanvas.java
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    /src/jalview/api/SiftsClientI.java
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    /src/jalview/appletgui/AlignFrame.java
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    /src/jalview/ext/jmol/JalviewJmolBinding.java
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    /src/jalview/ext/jmol/JmolCommands.java
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    /src/jalview/fts/service/pdb/PDBFTSPanel.java
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    /src/jalview/fts/service/uniprot/UniprotFTSPanel.java
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    /src/jalview/gui/AlignFrame.java
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    /src/jalview/gui/ChimeraViewFrame.java
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    /src/jalview/gui/Jalview2XML.java
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    /src/jalview/gui/StructureViewerBase.java
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    /src/jalview/io/AnnotationFile.java
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    /src/jalview/io/StructureFile.java
  16. … 9 more files in changeset.
Monday 05 Jun 2017
2:53 pm

Tochukwu Charles N Ofoegbu

Merge branch 'features/JAL-2136_phyre2_integration' into spikes/phyre

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2:48 pm

Tochukwu Charles N Ofoegbu

JAL-2136 Introduced DynamicData model, modified AnnotionFile to store Phyre meta-data in DynamicData object, modified SequenceAnnotationReport to build Phyre html meta-data from DynamicData list

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    /src/jalview/datamodel/DynamicData.java
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    /src/jalview/io/AnnotationFile.java
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    /src/jalview/io/AnnotationUtil.java
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    /src/jalview/io/SequenceAnnotationReport.java
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    /test/jalview/io/AnnotationFileIOTest.java
12:15 pm

Tochukwu Charles N Ofoegbu

Merge branch 'spikes/phyre' into features/JAL-2136_phyre2_integration

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Friday 02 Jun 2017
3:29 pm

Tochukwu Charles N Ofoegbu

JAL-2473 revised default minimum dimension for Alignment Frame windows

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    /src/jalview/gui/Desktop.java
Wednesday 31 May 2017
11:46 am

Tochukwu Charles N Ofoegbu

Merge branch 'develop' of https://source.jalview.org/git/jalview into develop

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11:46 am

Tochukwu Charles N Ofoegbu

JAL-2375 fix unit test to reflect improvement

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    /test/jalview/gui/StructureChooserTest.java
11:08 am

Tochukwu Charles N Ofoegbu

Fixed failing tests

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    /src/jalview/io/AppletFormatAdapter.java
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    /test/jalview/ext/jmol/JmolViewerTest.java
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    /test/jalview/io/FileLoaderTest.java
10:59 am

Tochukwu Charles N Ofoegbu

JAL-2533 updated unit test to reflect improvement

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    /test/jalview/ext/jmol/JmolParserTest.java
Monday 29 May 2017
3:12 pm

Tochukwu Charles N Ofoegbu

JAL-1648 improvement on finder searchbox keyboard control - Enter to update search box if popup is displayed otherwise perform find next action

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    /src/jalview/jbgui/GFinder.java
1:05 pm

Tochukwu Charles N Ofoegbu

JAL-1648 code fix - enter key should pick selected item on finder searchbox

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    /src/jalview/jbgui/GFinder.java
Friday 26 May 2017
3:27 pm

Tochukwu Charles N Ofoegbu

JAL-2465 Improvement to re-instate storing recently opened URLs for alignments loaded from a structure format via URL

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    /src/jalview/io/FileLoader.java
2:48 pm

Tochukwu Charles N Ofoegbu

JAL-2465 fix to prevent files loaded from the system's temporary directory from being included in recently opend files store

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    /src/jalview/io/FileLoader.java
12:46 pm

Tochukwu Charles N Ofoegbu

Merge branch 'features/JAL-1648_cache_user_inputs' of https://source.jalview.org/git/jalview into features/JAL-1648_cache_user_inputs

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    /src/jalview/gui/Finder.java
12:35 pm

Tochukwu Charles N Ofoegbu

JAL-1648 fix to transfer focus back to alignment frame when Finder window is close via hitting cancel or the excape key

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    /src/jalview/gui/Finder.java
Tuesday 23 May 2017
12:50 pm

Tochukwu Charles N Ofoegbu

12:50 pm

Tochukwu Charles N Ofoegbu

JAL-2536 Overview window sizing not subject to min size restrictions
JAL-2536 Overview window sizing not subject to min size restrictions
12:50 pm

Tochukwu Charles N Ofoegbu

All code changes look ok. Confirmed that overview window size is no longer being set to the default min size.

All code changes look ok. Confirmed that overview window size is no longer being set to the default min size.

Monday 22 May 2017
5:59 pm

Tochukwu Charles N Ofoegbu

Merge branch 'features/JAL-2136_phyre2_integration' into spikes/phyre

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11:59 am

Tochukwu Charles N Ofoegbu

JAL-2136 broken build fix attempt

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    /src/jalview/io/AnnotationFile.java
Monday 15 May 2017
4:07 pm

Tochukwu Charles N Ofoegbu

JAL-2520 improvement to use URL leaf name for creating temp file for URL file download

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    /src/jalview/io/FileLoader.java
3:52 pm

Tochukwu Charles N Ofoegbu

JAL-2533 improvement to prune off file extension when imported seqs are named with the data file

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    /src/jalview/io/StructureFile.java
Tuesday 09 May 2017
5:15 pm

Tochukwu Charles N Ofoegbu

JAL-2520 improvement to download and update structure files loaded via URL to a local file before parsing the file

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    /src/jalview/io/FileLoader.java
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    /src/jalview/ws/utils/UrlDownloadClient.java
4:56 pm

Tochukwu Charles N Ofoegbu

JAL-2520 unit test for improvement to download structure files from URL before parsing

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    /test/jalview/io/FileLoaderTest.java
12:11 pm

Tochukwu Charles N Ofoegbu

JAL-2465 fix to dynamically specify data source type in StructureSelectionManager.setMapping(...) method

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    /src/jalview/structure/StructureSelectionManager.java
Monday 08 May 2017
4:36 pm

Tochukwu Charles N Ofoegbu

Merge branch 'develop' of https://source.jalview.org/git/jalview into features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url

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    /src/MCview/AppletPDBCanvas.java
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    /src/MCview/PDBCanvas.java
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    /src/jalview/structure/StructureSelectionManager.java
Friday 05 May 2017
12:05 pm

Tochukwu Charles N Ofoegbu

JAL-2484 adjusted default cache settings panel's left border width

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    /src/jalview/io/cache/JvCacheableInputBox.java
Thursday 04 May 2017
7:22 pm

Tochukwu Charles N Ofoegbu

JAL-1648 improvements: enter key closes the popup and updates cache immidately, uniform font applied to all popup's component

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    /src/jalview/io/cache/JvCacheableInputBox.java
6:12 pm

Tochukwu Charles N Ofoegbu

JAL-1648 resolved CR-JAL-41 review issues

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    /src/jalview/io/cache/AppCache.java
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    /src/jalview/io/cache/JvCacheableInputBox.java
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    /test/jalview/io/cache/AppCacheTest.java
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    /test/jalview/io/cache/JvCacheableInputBoxTest.java
6:04 pm

Tochukwu Charles N Ofoegbu

Added more comment. Regarding InitCache, is should only be called by JvCacheableInputBox constructor. Hence, at the point of invocation there shouldn't be any un-persisted in-memory cache item yet....

Added more comment. Regarding InitCache, is should only be called by JvCacheableInputBox constructor. Hence, at the point of invocation there shouldn't be any un-persisted in-memory cache item yet. I've made it private and moved it to JvCachableInputBox class accordingly.