1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
4 <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
6 <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
8 <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
10 <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
12 <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
14 <xs:element name="align" type="tns:align"/>
16 <xs:element name="alignResponse" type="tns:alignResponse"/>
18 <xs:element name="cancelJob" type="tns:cancelJob"/>
20 <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
22 <xs:element name="customAlign" type="tns:customAlign"/>
24 <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
26 <xs:element name="getJobStatus" type="tns:getJobStatus"/>
28 <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
30 <xs:element name="getLimit" type="tns:getLimit"/>
32 <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
34 <xs:element name="getLimits" type="tns:getLimits"/>
36 <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
38 <xs:element name="getPresets" type="tns:getPresets"/>
40 <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
42 <xs:element name="getResult" type="tns:getResult"/>
44 <xs:element name="getResultResponse" type="tns:getResultResponse"/>
46 <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
48 <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
50 <xs:element name="limits" type="tns:limitsManager"/>
52 <xs:element name="presetAlign" type="tns:presetAlign"/>
54 <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
56 <xs:element name="presets" type="tns:presetManager"/>
58 <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
60 <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
62 <xs:element name="runnerConfig" type="tns:runnerConfig"/>
64 <xs:complexType name="getRunnerOptions">
68 <xs:complexType name="getRunnerOptionsResponse">
70 <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
74 <xs:complexType name="runnerConfig">
76 <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
77 <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
78 <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
79 <xs:element name="runnerClassName" type="xs:string"/>
83 <xs:complexType name="option">
85 <xs:element name="description" type="xs:string"/>
86 <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
87 <xs:element name="name" type="xs:string"/>
88 <xs:element name="furtherDetails" type="xs:string" minOccurs="0"/>
89 <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
91 <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
94 <xs:complexType name="parameter">
96 <xs:extension base="tns:option">
98 <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
99 <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
105 <xs:complexType name="valueConstrain">
107 <xs:element name="type" type="tns:type"/>
108 <xs:element name="max" type="xs:string" minOccurs="0"/>
109 <xs:element name="min" type="xs:string" minOccurs="0"/>
113 <xs:complexType name="getResult">
115 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
119 <xs:complexType name="getResultResponse">
121 <xs:element name="return" type="tns:alignment" minOccurs="0"/>
125 <xs:complexType name="alignment">
127 <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
128 <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
132 <xs:complexType name="alignmentMetadata">
134 <xs:element name="program" type="tns:program" minOccurs="0"/>
135 <xs:element name="gapchar" type="xs:unsignedShort"/>
139 <xs:complexType name="fastaSequence">
141 <xs:element name="id" type="xs:string" minOccurs="0"/>
142 <xs:element name="sequence" type="xs:string" minOccurs="0"/>
146 <xs:complexType name="jpredAlignment">
148 <xs:extension base="tns:alignment">
154 <xs:complexType name="ResultNotAvailableException">
156 <xs:element name="message" type="xs:string" minOccurs="0"/>
160 <xs:complexType name="getJobStatus">
162 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
166 <xs:complexType name="getJobStatusResponse">
168 <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
172 <xs:complexType name="align">
174 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
178 <xs:complexType name="alignResponse">
180 <xs:element name="return" type="xs:string" minOccurs="0"/>
184 <xs:complexType name="UnsupportedRuntimeException">
186 <xs:element name="message" type="xs:string" minOccurs="0"/>
190 <xs:complexType name="LimitExceededException">
192 <xs:element name="actualNumberofSequences" type="xs:int"/>
193 <xs:element name="message" type="xs:string" minOccurs="0"/>
194 <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
195 <xs:element name="sequenceLenghtActual" type="xs:int"/>
196 <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
200 <xs:complexType name="JobSubmissionException">
202 <xs:element name="message" type="xs:string" minOccurs="0"/>
206 <xs:complexType name="customAlign">
208 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
209 <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
213 <xs:complexType name="customAlignResponse">
215 <xs:element name="return" type="xs:string" minOccurs="0"/>
219 <xs:complexType name="WrongParameterException">
221 <xs:element name="message" type="xs:string" minOccurs="0"/>
225 <xs:complexType name="pullExecStatistics">
227 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
228 <xs:element name="position" type="xs:long"/>
232 <xs:complexType name="pullExecStatisticsResponse">
234 <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
238 <xs:complexType name="chunkHolder">
240 <xs:element name="chunk" type="xs:string" minOccurs="0"/>
241 <xs:element name="position" type="xs:long"/>
245 <xs:complexType name="presetAlign">
247 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
248 <xs:element name="preset" type="tns:preset" minOccurs="0"/>
252 <xs:complexType name="preset">
254 <xs:element name="name" type="xs:string"/>
255 <xs:element name="description" type="xs:string" minOccurs="0"/>
256 <xs:element name="optlist" minOccurs="0">
259 <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
266 <xs:complexType name="presetAlignResponse">
268 <xs:element name="return" type="xs:string" minOccurs="0"/>
272 <xs:complexType name="getPresets">
276 <xs:complexType name="getPresetsResponse">
278 <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
282 <xs:complexType name="presetManager">
284 <xs:element name="runnerClassName" type="xs:string"/>
285 <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
289 <xs:complexType name="getLimits">
293 <xs:complexType name="getLimitsResponse">
295 <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
299 <xs:complexType name="limitsManager">
301 <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
302 <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
306 <xs:complexType name="limit">
308 <xs:element name="preset" type="xs:string" minOccurs="0"/>
309 <xs:element name="seqNumber" type="xs:int"/>
310 <xs:element name="seqLength" type="xs:int"/>
312 <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
315 <xs:complexType name="getLimit">
317 <xs:element name="presetName" type="xs:string" minOccurs="0"/>
321 <xs:complexType name="getLimitResponse">
323 <xs:element name="return" type="tns:limit" minOccurs="0"/>
327 <xs:complexType name="cancelJob">
329 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
333 <xs:complexType name="cancelJobResponse">
335 <xs:element name="return" type="xs:boolean"/>
339 <xs:simpleType name="type">
340 <xs:restriction base="xs:string">
341 <xs:enumeration value="Integer"/>
342 <xs:enumeration value="Float"/>
346 <xs:simpleType name="program">
347 <xs:restriction base="xs:string">
348 <xs:enumeration value="CLUSTAL"/>
349 <xs:enumeration value="ClustalO"/>
350 <xs:enumeration value="Mafft"/>
351 <xs:enumeration value="Muscle"/>
352 <xs:enumeration value="Tcoffee"/>
353 <xs:enumeration value="Probcons"/>
354 <xs:enumeration value="MSAprobs"/>
355 <xs:enumeration value="GLprobs"/>
356 <xs:enumeration value="Jpred"/>
360 <xs:simpleType name="jobStatus">
361 <xs:restriction base="xs:string">
362 <xs:enumeration value="PENDING"/>
363 <xs:enumeration value="RUNNING"/>
364 <xs:enumeration value="CANCELLED"/>
365 <xs:enumeration value="FINISHED"/>
366 <xs:enumeration value="FAILED"/>
367 <xs:enumeration value="UNDEFINED"/>
368 <xs:enumeration value="STARTED"/>
369 <xs:enumeration value="SUBMITTED"/>
370 <xs:enumeration value="COLLECTED"/>