1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
4 <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
6 <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
8 <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
10 <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
12 <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
14 <xs:element name="align" type="tns:align"/>
16 <xs:element name="alignResponse" type="tns:alignResponse"/>
18 <xs:element name="cancelJob" type="tns:cancelJob"/>
20 <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
22 <xs:element name="customAlign" type="tns:customAlign"/>
24 <xs:element name="customAlignResponse" type="tns:customAlignResponse"/>
26 <xs:element name="getJobStatus" type="tns:getJobStatus"/>
28 <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
30 <xs:element name="getLimit" type="tns:getLimit"/>
32 <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
34 <xs:element name="getLimits" type="tns:getLimits"/>
36 <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
38 <xs:element name="getPresets" type="tns:getPresets"/>
40 <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
42 <xs:element name="getResult" type="tns:getResult"/>
44 <xs:element name="getResultResponse" type="tns:getResultResponse"/>
46 <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
48 <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
50 <xs:element name="limits" type="tns:limitsManager"/>
52 <xs:element name="presetAlign" type="tns:presetAlign"/>
54 <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
56 <xs:element name="presets" type="tns:presetManager"/>
58 <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
60 <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
62 <xs:element name="runnerConfig" type="tns:runnerConfig"/>
64 <xs:complexType name="pullExecStatistics">
66 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
67 <xs:element name="position" type="xs:long"/>
71 <xs:complexType name="pullExecStatisticsResponse">
73 <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
77 <xs:complexType name="chunkHolder">
79 <xs:element name="chunk" type="xs:string" minOccurs="0"/>
80 <xs:element name="position" type="xs:long"/>
84 <xs:complexType name="align">
86 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
90 <xs:complexType name="fastaSequence">
92 <xs:element name="id" type="xs:string" minOccurs="0"/>
93 <xs:element name="sequence" type="xs:string" minOccurs="0"/>
97 <xs:complexType name="alignResponse">
99 <xs:element name="return" type="xs:string" minOccurs="0"/>
103 <xs:complexType name="UnsupportedRuntimeException">
105 <xs:element name="message" type="xs:string" minOccurs="0"/>
109 <xs:complexType name="LimitExceededException">
111 <xs:element name="actualNumberofSequences" type="xs:int"/>
112 <xs:element name="message" type="xs:string" minOccurs="0"/>
113 <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
114 <xs:element name="sequenceLenghtActual" type="xs:int"/>
115 <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
119 <xs:complexType name="JobSubmissionException">
121 <xs:element name="message" type="xs:string" minOccurs="0"/>
125 <xs:complexType name="customAlign">
127 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
128 <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
132 <xs:complexType name="option">
134 <xs:element name="description" type="xs:string"/>
135 <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
136 <xs:element name="name" type="xs:string"/>
137 <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
138 <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
140 <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
143 <xs:complexType name="customAlignResponse">
145 <xs:element name="return" type="xs:string" minOccurs="0"/>
149 <xs:complexType name="WrongParameterException">
151 <xs:element name="message" type="xs:string" minOccurs="0"/>
155 <xs:complexType name="getPresets">
159 <xs:complexType name="getPresetsResponse">
161 <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
165 <xs:complexType name="presetManager">
167 <xs:element name="runnerClassName" type="xs:string"/>
168 <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
172 <xs:complexType name="preset">
174 <xs:element name="name" type="xs:string"/>
175 <xs:element name="description" type="xs:string" minOccurs="0"/>
176 <xs:element name="optlist" minOccurs="0">
179 <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
186 <xs:complexType name="getLimits">
190 <xs:complexType name="getLimitsResponse">
192 <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
196 <xs:complexType name="limitsManager">
198 <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
199 <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
203 <xs:complexType name="limit">
205 <xs:element name="preset" type="xs:string" minOccurs="0"/>
206 <xs:element name="seqNumber" type="xs:int"/>
207 <xs:element name="seqLength" type="xs:int"/>
209 <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
212 <xs:complexType name="getLimit">
214 <xs:element name="presetName" type="xs:string" minOccurs="0"/>
218 <xs:complexType name="getLimitResponse">
220 <xs:element name="return" type="tns:limit" minOccurs="0"/>
224 <xs:complexType name="cancelJob">
226 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
230 <xs:complexType name="cancelJobResponse">
232 <xs:element name="return" type="xs:boolean"/>
236 <xs:complexType name="presetAlign">
238 <xs:element name="fastaSequences" type="tns:fastaSequence" minOccurs="0" maxOccurs="unbounded"/>
239 <xs:element name="preset" type="tns:preset" minOccurs="0"/>
243 <xs:complexType name="presetAlignResponse">
245 <xs:element name="return" type="xs:string" minOccurs="0"/>
249 <xs:complexType name="getRunnerOptions">
253 <xs:complexType name="getRunnerOptionsResponse">
255 <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
259 <xs:complexType name="runnerConfig">
261 <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
262 <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
263 <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
264 <xs:element name="runnerClassName" type="xs:string"/>
268 <xs:complexType name="parameter">
270 <xs:extension base="tns:option">
272 <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
273 <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
279 <xs:complexType name="valueConstrain">
281 <xs:element name="type" type="tns:type"/>
282 <xs:element name="max" type="xs:string" minOccurs="0"/>
283 <xs:element name="min" type="xs:string" minOccurs="0"/>
287 <xs:complexType name="getResult">
289 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
293 <xs:complexType name="getResultResponse">
295 <xs:element name="return" type="tns:alignment" minOccurs="0"/>
299 <xs:complexType name="alignment" final="extension restriction">
301 <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
302 <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
306 <xs:complexType name="alignmentMetadata">
308 <xs:element name="program" type="tns:program" minOccurs="0"/>
309 <xs:element name="gapchar" type="xs:unsignedShort"/>
313 <xs:complexType name="ResultNotAvailableException">
315 <xs:element name="message" type="xs:string" minOccurs="0"/>
319 <xs:complexType name="getJobStatus">
321 <xs:element name="jobId" type="xs:string" minOccurs="0"/>
325 <xs:complexType name="getJobStatusResponse">
327 <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
331 <xs:simpleType name="type">
332 <xs:restriction base="xs:string">
333 <xs:enumeration value="Integer"/>
334 <xs:enumeration value="Float"/>
338 <xs:simpleType name="program">
339 <xs:restriction base="xs:string">
340 <xs:enumeration value="CLUSTAL"/>
341 <xs:enumeration value="MAFFT"/>
342 <xs:enumeration value="MUSCLE"/>
343 <xs:enumeration value="Tcoffee"/>
344 <xs:enumeration value="Probcons"/>
348 <xs:simpleType name="jobStatus">
349 <xs:restriction base="xs:string">
350 <xs:enumeration value="PENDING"/>
351 <xs:enumeration value="RUNNING"/>
352 <xs:enumeration value="CANCELLED"/>
353 <xs:enumeration value="FINISHED"/>
354 <xs:enumeration value="FAILED"/>
355 <xs:enumeration value="UNDEFINED"/>
356 <xs:enumeration value="STARTED"/>
357 <xs:enumeration value="SUBMITTED"/>
358 <xs:enumeration value="COLLECTED"/>