1 /* Copyright (c) 2009 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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19 package compbio.ws.client;
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21 import java.net.URL;
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23 import javax.xml.namespace.QName;
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24 import javax.xml.ws.Service;
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26 import compbio.data.msa.JABAService;
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27 import compbio.data.msa.MsaWS;
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28 import compbio.data.msa.SequenceAnnotation;
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29 import compbio.engine.client.Executable;
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32 * List of web services currently supported by JABAWS version 2
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35 public enum Services {
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36 MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS;
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38 public static Services getService(String servName) {
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39 servName = servName.trim().toLowerCase();
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40 for (Services service : Services.values()) {
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41 if (service.toString().equalsIgnoreCase(servName)) {
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48 public static Services getService(Class<Executable<?>> runnerClassName) {
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49 assert runnerClassName != null;
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50 String sname = runnerClassName.getSimpleName().toLowerCase();
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51 for (Services service : Services.values()) {
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52 if (service.toString().toLowerCase().contains(sname)) {
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59 Service getService(URL url, String sqname) {
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60 QName qname = new QName(sqname, this.toString());
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61 return Service.create(url, qname);
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64 Class<? extends JABAService> getServiceType() {
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66 // deliberate leaking
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72 return SequenceAnnotation.class;
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74 // deliberate leaking
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83 throw new RuntimeException("Unrecognised Web Service Type "
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84 + this + " - Should never happened!");
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88 JABAService getInterface(Service service) {
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89 assert service != null;
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91 QName portName = new QName(service.getServiceName().getNamespaceURI(),
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92 this.toString() + "Port");
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93 return service.getPort(portName, this.getServiceType());
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