1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
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2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
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6 <display-name>ProteoCache</display-name>
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7 <description>ProteoCache - Results repository for the Dundee Resource</description>
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10 <welcome-file>Index.jsp</welcome-file>
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11 </welcome-file-list>
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13 <!-- ProteoCache listeners -->
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15 <listener-class>compbio.listeners.ContextListener</listener-class>
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19 <!-- Session timeout in minutes -->
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21 <session-timeout>20</session-timeout>
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26 <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>
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27 <servlet-name>listings</servlet-name>
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28 <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>
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30 <param-name>debug</param-name>
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31 <param-value>0</param-value>
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34 <param-name>readonly</param-name>
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35 <param-value>true</param-value>
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38 <param-name>listings</param-name>
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39 <param-value>true</param-value>
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41 <load-on-startup>1</load-on-startup>
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45 <!-- ProteoCache servlets -->
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48 <description>Display pre-calculated accounting info</description>
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49 <servlet-name>DisplayStat</servlet-name>
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50 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
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54 <description>WebServices Status</description>
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55 <servlet-name>ServiceStatus</servlet-name>
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56 <servlet-class>compbio.stat.servlet.ServiceStatus</servlet-class>
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60 <servlet-name>DownloadRedirector</servlet-name>
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61 <servlet-class>compbio.stat.servlet.DownloadRedirector</servlet-class>
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65 <description>WebService Status with no UI. Accepts web service name as a parameter</description>
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66 <servlet-name>HttpCodeResponseServiceStatus</servlet-name>
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67 <servlet-class>compbio.stat.servlet.HttpCodeResponseServiceStatus</servlet-class>
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71 <description>Display job list</description>
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72 <servlet-name>Joblist</servlet-name>
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73 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
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77 <description>Display monthly summary statistics</description>
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78 <servlet-name>AnnualStat</servlet-name>
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79 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
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83 <description>Display monthly summary statistics with no links to details</description>
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84 <servlet-name>PublicAnnualStat</servlet-name>
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85 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
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89 <servlet-name>RegistryWS</servlet-name>
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90 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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91 <load-on-startup>1</load-on-startup>
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95 <servlet-name>ClustalWS</servlet-name>
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96 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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97 <load-on-startup>1</load-on-startup>
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101 <servlet-name>ClustalOWS</servlet-name>
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102 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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103 <load-on-startup>1</load-on-startup>
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107 <servlet-name>MuscleWS</servlet-name>
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108 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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109 <load-on-startup>1</load-on-startup>
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113 <servlet-name>MafftWS</servlet-name>
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114 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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115 <load-on-startup>1</load-on-startup>
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119 <servlet-name>TcoffeeWS</servlet-name>
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120 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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121 <load-on-startup>1</load-on-startup>
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125 <servlet-name>ProbconsWS</servlet-name>
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126 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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127 <load-on-startup>1</load-on-startup>
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131 <servlet-name>MSAprobsWS</servlet-name>
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132 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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133 <load-on-startup>1</load-on-startup>
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137 <servlet-name>GLprobsWS</servlet-name>
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138 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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139 <load-on-startup>1</load-on-startup>
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143 <servlet-name>AAConWS</servlet-name>
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144 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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145 <load-on-startup>1</load-on-startup>
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149 <servlet-name>JronnWS</servlet-name>
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150 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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151 <load-on-startup>1</load-on-startup>
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155 <servlet-name>DisemblWS</servlet-name>
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156 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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157 <load-on-startup>1</load-on-startup>
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161 <servlet-name>GlobPlotWS</servlet-name>
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162 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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163 <load-on-startup>1</load-on-startup>
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167 <servlet-name>IUPredWS</servlet-name>
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168 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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169 <load-on-startup>1</load-on-startup>
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173 <servlet-name>JpredWS</servlet-name>
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174 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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175 <load-on-startup>1</load-on-startup>
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178 <servlet-name>RNAalifoldWS</servlet-name>
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179 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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180 <load-on-startup>1</load-on-startup>
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186 <!-- ProteoCache servlet mappings -->
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189 <servlet-name>listings</servlet-name>
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190 <url-pattern>/</url-pattern>
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194 <servlet-name>DownloadRedirector</servlet-name>
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195 <url-pattern>/download</url-pattern>
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199 <servlet-name>DisplayStat</servlet-name>
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200 <url-pattern>/DisplayStat</url-pattern>
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204 <servlet-name>ServiceStatus</servlet-name>
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205 <url-pattern>/ServiceStatus</url-pattern>
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209 <servlet-name>HttpCodeResponseServiceStatus</servlet-name>
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210 <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>
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214 <servlet-name>AnnualStat</servlet-name>
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215 <url-pattern>/AnnualStat</url-pattern>
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219 <servlet-name>PublicAnnualStat</servlet-name>
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220 <url-pattern>/PublicAnnualStat</url-pattern>
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224 <servlet-name>Joblist</servlet-name>
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225 <url-pattern>/Joblist</url-pattern>
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229 <servlet-name>RegistryWS</servlet-name>
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230 <url-pattern>/RegistryWS</url-pattern>
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234 <servlet-name>ClustalWS</servlet-name>
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235 <url-pattern>/ClustalWS</url-pattern>
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239 <servlet-name>ClustalOWS</servlet-name>
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240 <url-pattern>/ClustalOWS</url-pattern>
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244 <servlet-name>MuscleWS</servlet-name>
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245 <url-pattern>/MuscleWS</url-pattern>
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249 <servlet-name>MafftWS</servlet-name>
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250 <url-pattern>/MafftWS</url-pattern>
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254 <servlet-name>TcoffeeWS</servlet-name>
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255 <url-pattern>/TcoffeeWS</url-pattern>
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259 <servlet-name>ProbconsWS</servlet-name>
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260 <url-pattern>/ProbconsWS</url-pattern>
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264 <servlet-name>MSAprobsWS</servlet-name>
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265 <url-pattern>/MSAprobsWS</url-pattern>
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269 <servlet-name>GLprobsWS</servlet-name>
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270 <url-pattern>/GLprobsWS</url-pattern>
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274 <servlet-name>AAConWS</servlet-name>
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275 <url-pattern>/AAConWS</url-pattern>
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279 <servlet-name>JronnWS</servlet-name>
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280 <url-pattern>/JronnWS</url-pattern>
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284 <servlet-name>DisemblWS</servlet-name>
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285 <url-pattern>/DisemblWS</url-pattern>
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289 <servlet-name>GlobPlotWS</servlet-name>
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290 <url-pattern>/GlobPlotWS</url-pattern>
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294 <servlet-name>IUPredWS</servlet-name>
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295 <url-pattern>/IUPredWS</url-pattern>
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299 <servlet-name>JpredWS</servlet-name>
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300 <url-pattern>/JpredWS</url-pattern>
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304 <servlet-name>RNAalifoldWS</servlet-name>
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305 <url-pattern>/RNAalifoldWS</url-pattern>
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310 <!-- ProteoCache security constraints -->
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311 <security-constraint>
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312 <web-resource-collection>
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313 <web-resource-name>Administrator pages</web-resource-name>
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314 <!-- Prohibit access to any resources -->
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315 <url-pattern>/DisplayStat</url-pattern>
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316 <url-pattern>/Joblist</url-pattern>
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317 <url-pattern>/AnnualStat</url-pattern>
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318 <url-pattern>/conf/*</url-pattern>
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319 <url-pattern>/binaries/*</url-pattern>
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320 <url-pattern>/testsrc/*</url-pattern>
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321 <url-pattern>/lib/*</url-pattern>
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322 <!-- Uncomment this to secure services status checker
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323 <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>
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324 <url-pattern>/ServiceStatus</url-pattern>
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326 <!-- No http-method means all methods are constrained -->
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327 </web-resource-collection>
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329 <role-name>admin</role-name>
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331 </security-constraint>
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334 <!-- unsupported HTTP methods -->
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335 <security-constraint>
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336 <web-resource-collection>
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337 <web-resource-name>unsupported HTTP methods</web-resource-name>
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338 <url-pattern>/*</url-pattern>
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339 <http-method>PUT</http-method>
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340 <http-method>DELETE</http-method>
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341 <http-method>TRACE</http-method>
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342 <http-method>OPTIONS</http-method>
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343 </web-resource-collection>
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345 </security-constraint>
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347 <!-- Define the Login Configuration for this Application -->
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349 <auth-method>BASIC</auth-method>
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350 <realm-name>ProteCache administrators</realm-name>
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354 <!-- Security roles referenced by this web application -->
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356 <description>The role that is required to log in and view ProteCache internals</description>
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357 <role-name>admin</role-name>
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