1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
\r
2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
\r
3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
\r
6 <display-name>JABAWS</display-name>
\r
7 <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>
\r
10 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>
\r
13 <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>
\r
16 <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
\r
19 <!-- Session timeout in minutes -->
\r
21 <session-timeout>20</session-timeout>
\r
25 <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>
\r
26 <servlet-name>listings</servlet-name>
\r
27 <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>
\r
29 <param-name>debug</param-name>
\r
30 <param-value>0</param-value>
\r
33 <param-name>readonly</param-name>
\r
34 <param-value>true</param-value>
\r
37 <param-name>listings</param-name>
\r
38 <param-value>true</param-value>
\r
40 <load-on-startup>1</load-on-startup>
\r
44 <description>Display pre-calculated accounting info</description>
\r
45 <servlet-name>DisplayStat</servlet-name>
\r
46 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
\r
50 <description>Display job list</description>
\r
51 <servlet-name>Joblist</servlet-name>
\r
52 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
\r
56 <description>Display monthly summary statistics</description>
\r
57 <servlet-name>AnnualStat</servlet-name>
\r
58 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
\r
62 <servlet-name>RegistryWS</servlet-name>
\r
63 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
64 <load-on-startup>1</load-on-startup>
\r
68 <servlet-name>ClustalWS</servlet-name>
\r
69 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
70 <load-on-startup>1</load-on-startup>
\r
74 <servlet-name>MuscleWS</servlet-name>
\r
75 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
76 <load-on-startup>1</load-on-startup>
\r
80 <servlet-name>MafftWS</servlet-name>
\r
81 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
82 <load-on-startup>1</load-on-startup>
\r
86 <servlet-name>TcoffeeWS</servlet-name>
\r
87 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
88 <load-on-startup>1</load-on-startup>
\r
92 <servlet-name>ProbconsWS</servlet-name>
\r
93 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
94 <load-on-startup>1</load-on-startup>
\r
98 <servlet-name>AAConWS</servlet-name>
\r
99 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
100 <load-on-startup>1</load-on-startup>
\r
104 <servlet-name>JronnWS</servlet-name>
\r
105 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
106 <load-on-startup>1</load-on-startup>
\r
110 <servlet-name>DisemblWS</servlet-name>
\r
111 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
112 <load-on-startup>1</load-on-startup>
\r
116 <servlet-name>GlobPlotWS</servlet-name>
\r
117 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
118 <load-on-startup>1</load-on-startup>
\r
122 <servlet-name>IUPredWS</servlet-name>
\r
123 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
124 <load-on-startup>1</load-on-startup>
\r
128 <servlet-name>listings</servlet-name>
\r
129 <url-pattern>/</url-pattern>
\r
133 <servlet-name>DisplayStat</servlet-name>
\r
134 <url-pattern>/DisplayStat</url-pattern>
\r
138 <servlet-name>AnnualStat</servlet-name>
\r
139 <url-pattern>/AnnualStat</url-pattern>
\r
140 </servlet-mapping>
\r
143 <servlet-name>Joblist</servlet-name>
\r
144 <url-pattern>/Joblist</url-pattern>
\r
145 </servlet-mapping>
\r
148 <servlet-name>RegistryWS</servlet-name>
\r
149 <url-pattern>/RegistryWS</url-pattern>
\r
153 <servlet-name>ClustalWS</servlet-name>
\r
154 <url-pattern>/ClustalWS</url-pattern>
\r
158 <servlet-name>MuscleWS</servlet-name>
\r
159 <url-pattern>/MuscleWS</url-pattern>
\r
163 <servlet-name>MafftWS</servlet-name>
\r
164 <url-pattern>/MafftWS</url-pattern>
\r
168 <servlet-name>TcoffeeWS</servlet-name>
\r
169 <url-pattern>/TcoffeeWS</url-pattern>
\r
173 <servlet-name>ProbconsWS</servlet-name>
\r
174 <url-pattern>/ProbconsWS</url-pattern>
\r
178 <servlet-name>AAConWS</servlet-name>
\r
179 <url-pattern>/AAConWS</url-pattern>
\r
183 <servlet-name>JronnWS</servlet-name>
\r
184 <url-pattern>/JronnWS</url-pattern>
\r
188 <servlet-name>DisemblWS</servlet-name>
\r
189 <url-pattern>/DisemblWS</url-pattern>
\r
193 <servlet-name>GlobPlotWS</servlet-name>
\r
194 <url-pattern>/GlobPlotWS</url-pattern>
\r
198 <servlet-name>IUPredWS</servlet-name>
\r
199 <url-pattern>/IUPredWS</url-pattern>
\r
202 <security-constraint>
\r
203 <web-resource-collection>
\r
204 <web-resource-name>Administrator pages</web-resource-name>
\r
205 <!-- Prohibit access to any resources -->
\r
206 <url-pattern>/</url-pattern>
\r
207 <url-pattern>/DisplayStat</url-pattern>
\r
208 <url-pattern>/Joblist</url-pattern>
\r
209 <url-pattern>/AnnualStat</url-pattern>
\r
210 <url-pattern>/conf/*</url-pattern>
\r
211 <url-pattern>/binaries/*</url-pattern>
\r
212 <url-pattern>/jobsout/*</url-pattern>
\r
213 <url-pattern>/testsrc/*</url-pattern>
\r
214 <url-pattern>/lib/*</url-pattern>
\r
215 <url-pattern>/test-output/*</url-pattern>
\r
216 <!-- No http-method means all methods are constrained -->
\r
217 </web-resource-collection>
\r
219 <role-name>admin</role-name>
\r
221 </security-constraint>
\r
223 <!-- unsupported HTTP methods -->
\r
224 <security-constraint>
\r
225 <web-resource-collection>
\r
226 <web-resource-name>unsupported HTTP methods</web-resource-name>
\r
227 <url-pattern>/*</url-pattern>
\r
228 <http-method>PUT</http-method>
\r
229 <http-method>DELETE</http-method>
\r
230 <http-method>TRACE</http-method>
\r
231 <http-method>HEAD</http-method>
\r
232 <http-method>OPTIONS</http-method>
\r
233 </web-resource-collection>
\r
235 </security-constraint>
\r
236 <!-- Define the Login Configuration for this Application -->
\r
238 <auth-method>BASIC</auth-method>
\r
239 <realm-name>JABAWS administrators</realm-name>
\r
242 <!-- Security roles referenced by this web application -->
\r
245 The role that is required to log in and view JABAWS internals
\r
247 <role-name>admin</role-name>
\r