1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
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2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
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6 <display-name>JABAWS</display-name>
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7 <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>
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10 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>
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13 <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>
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16 <listener-class>compbio.ws.server.SetExecutableFlag</listener-class>
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19 <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
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22 <!-- Session timeout in minutes -->
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24 <session-timeout>20</session-timeout>
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28 <display-name>This is a standard tomcat 'default' servlet for making listings</display-name>
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29 <servlet-name>listings</servlet-name>
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30 <servlet-class>org.apache.catalina.servlets.DefaultServlet</servlet-class>
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32 <param-name>debug</param-name>
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33 <param-value>0</param-value>
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36 <param-name>readonly</param-name>
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37 <param-value>true</param-value>
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40 <param-name>listings</param-name>
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41 <param-value>true</param-value>
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43 <load-on-startup>1</load-on-startup>
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47 <description>Display pre-calculated accounting info</description>
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48 <servlet-name>DisplayStat</servlet-name>
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49 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
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53 <description>WebServices Status</description>
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54 <servlet-name>ServiceStatus</servlet-name>
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55 <servlet-class>compbio.stat.servlet.ServiceStatus</servlet-class>
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59 <description>WebService Status with no UI. Accepts web service name as a parameter</description>
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60 <servlet-name>HttpCodeResponseServiceStatus</servlet-name>
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61 <servlet-class>compbio.stat.servlet.HttpCodeResponseServiceStatus</servlet-class>
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65 <description>Display job list</description>
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66 <servlet-name>Joblist</servlet-name>
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67 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
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71 <description>Display monthly summary statistics</description>
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72 <servlet-name>AnnualStat</servlet-name>
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73 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
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77 <description>Display monthly summary statistics with no links to details</description>
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78 <servlet-name>PublicAnnualStat</servlet-name>
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79 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
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83 <servlet-name>RegistryWS</servlet-name>
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84 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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85 <load-on-startup>1</load-on-startup>
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89 <servlet-name>ClustalWS</servlet-name>
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90 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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91 <load-on-startup>1</load-on-startup>
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95 <servlet-name>ClustalOWS</servlet-name>
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96 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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97 <load-on-startup>1</load-on-startup>
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101 <servlet-name>MuscleWS</servlet-name>
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102 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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103 <load-on-startup>1</load-on-startup>
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107 <servlet-name>MafftWS</servlet-name>
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108 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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109 <load-on-startup>1</load-on-startup>
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113 <servlet-name>TcoffeeWS</servlet-name>
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114 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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115 <load-on-startup>1</load-on-startup>
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119 <servlet-name>ProbconsWS</servlet-name>
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120 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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121 <load-on-startup>1</load-on-startup>
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125 <servlet-name>AAConWS</servlet-name>
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126 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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127 <load-on-startup>1</load-on-startup>
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131 <servlet-name>JronnWS</servlet-name>
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132 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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133 <load-on-startup>1</load-on-startup>
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137 <servlet-name>DisemblWS</servlet-name>
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138 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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139 <load-on-startup>1</load-on-startup>
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143 <servlet-name>GlobPlotWS</servlet-name>
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144 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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145 <load-on-startup>1</load-on-startup>
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149 <servlet-name>IUPredWS</servlet-name>
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150 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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151 <load-on-startup>1</load-on-startup>
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155 <servlet-name>listings</servlet-name>
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156 <url-pattern>/</url-pattern>
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160 <servlet-name>DisplayStat</servlet-name>
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161 <url-pattern>/DisplayStat</url-pattern>
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165 <servlet-name>ServiceStatus</servlet-name>
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166 <url-pattern>/ServiceStatus</url-pattern>
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170 <servlet-name>HttpCodeResponseServiceStatus</servlet-name>
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171 <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>
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175 <servlet-name>AnnualStat</servlet-name>
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176 <url-pattern>/AnnualStat</url-pattern>
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177 </servlet-mapping>
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180 <servlet-name>PublicAnnualStat</servlet-name>
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181 <url-pattern>/PublicAnnualStat</url-pattern>
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182 </servlet-mapping>
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186 <servlet-name>Joblist</servlet-name>
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187 <url-pattern>/Joblist</url-pattern>
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188 </servlet-mapping>
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191 <servlet-name>RegistryWS</servlet-name>
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192 <url-pattern>/RegistryWS</url-pattern>
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196 <servlet-name>ClustalWS</servlet-name>
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197 <url-pattern>/ClustalWS</url-pattern>
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201 <servlet-name>ClustalOWS</servlet-name>
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202 <url-pattern>/ClustalOWS</url-pattern>
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206 <servlet-name>MuscleWS</servlet-name>
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207 <url-pattern>/MuscleWS</url-pattern>
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211 <servlet-name>MafftWS</servlet-name>
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212 <url-pattern>/MafftWS</url-pattern>
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216 <servlet-name>TcoffeeWS</servlet-name>
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217 <url-pattern>/TcoffeeWS</url-pattern>
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221 <servlet-name>ProbconsWS</servlet-name>
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222 <url-pattern>/ProbconsWS</url-pattern>
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226 <servlet-name>AAConWS</servlet-name>
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227 <url-pattern>/AAConWS</url-pattern>
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231 <servlet-name>JronnWS</servlet-name>
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232 <url-pattern>/JronnWS</url-pattern>
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236 <servlet-name>DisemblWS</servlet-name>
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237 <url-pattern>/DisemblWS</url-pattern>
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241 <servlet-name>GlobPlotWS</servlet-name>
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242 <url-pattern>/GlobPlotWS</url-pattern>
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246 <servlet-name>IUPredWS</servlet-name>
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247 <url-pattern>/IUPredWS</url-pattern>
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250 <security-constraint>
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251 <web-resource-collection>
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252 <web-resource-name>Administrator pages</web-resource-name>
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253 <!-- Prohibit access to any resources -->
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254 <url-pattern>/</url-pattern>
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255 <url-pattern>/DisplayStat</url-pattern>
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256 <url-pattern>/Joblist</url-pattern>
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257 <url-pattern>/AnnualStat</url-pattern>
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258 <url-pattern>/conf/*</url-pattern>
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259 <url-pattern>/binaries/*</url-pattern>
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260 <url-pattern>/jobsout/*</url-pattern>
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261 <url-pattern>/testsrc/*</url-pattern>
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262 <url-pattern>/lib/*</url-pattern>
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263 <url-pattern>/test-output/*</url-pattern>
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264 <!-- Uncomment this to secure services status checker
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265 <url-pattern>/HttpCodeResponseServiceStatus/*</url-pattern>
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266 <url-pattern>/ServiceStatus</url-pattern>
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268 <!-- No http-method means all methods are constrained -->
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269 </web-resource-collection>
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271 <role-name>admin</role-name>
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273 </security-constraint>
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275 <!-- unsupported HTTP methods -->
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276 <security-constraint>
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277 <web-resource-collection>
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278 <web-resource-name>unsupported HTTP methods</web-resource-name>
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279 <url-pattern>/*</url-pattern>
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280 <http-method>PUT</http-method>
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281 <http-method>DELETE</http-method>
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282 <http-method>TRACE</http-method>
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283 <http-method>HEAD</http-method>
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284 <http-method>OPTIONS</http-method>
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285 </web-resource-collection>
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287 </security-constraint>
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288 <!-- Define the Login Configuration for this Application -->
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290 <auth-method>BASIC</auth-method>
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291 <realm-name>JABAWS administrators</realm-name>
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294 <!-- Security roles referenced by this web application -->
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297 The role that is required to log in and view JABAWS internals
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299 <role-name>admin</role-name>
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