1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
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2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
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6 <display-name>JABAWS</display-name>
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7 <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>
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10 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>
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13 <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>
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16 <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
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19 <!-- Session timeout in minutes -->
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21 <session-timeout>20</session-timeout>
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25 <description>Display pre-calculated accounting info</description>
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26 <servlet-name>DisplayStat</servlet-name>
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27 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
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31 <description>Display job list</description>
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32 <servlet-name>Joblist</servlet-name>
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33 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
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37 <servlet-name>ClustalWS</servlet-name>
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38 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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39 <load-on-startup>1</load-on-startup>
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43 <servlet-name>MuscleWS</servlet-name>
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44 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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45 <load-on-startup>1</load-on-startup>
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49 <servlet-name>MafftWS</servlet-name>
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50 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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51 <load-on-startup>1</load-on-startup>
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55 <servlet-name>TcoffeeWS</servlet-name>
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56 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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57 <load-on-startup>1</load-on-startup>
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61 <servlet-name>ProbconsWS</servlet-name>
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62 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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63 <load-on-startup>1</load-on-startup>
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67 <servlet-name>AAConWS</servlet-name>
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68 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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69 <load-on-startup>1</load-on-startup>
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73 <servlet-name>JronnWS</servlet-name>
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74 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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75 <load-on-startup>1</load-on-startup>
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79 <servlet-name>DisemblWS</servlet-name>
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80 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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81 <load-on-startup>1</load-on-startup>
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85 <servlet-name>GlobPlotWS</servlet-name>
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86 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
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87 <load-on-startup>1</load-on-startup>
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91 <servlet-name>DisplayStat</servlet-name>
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92 <url-pattern>/DisplayStat</url-pattern>
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96 <servlet-name>Joblist</servlet-name>
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97 <url-pattern>/Joblist</url-pattern>
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101 <servlet-name>ClustalWS</servlet-name>
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102 <url-pattern>/ClustalWS</url-pattern>
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106 <servlet-name>MuscleWS</servlet-name>
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107 <url-pattern>/MuscleWS</url-pattern>
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111 <servlet-name>MafftWS</servlet-name>
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112 <url-pattern>/MafftWS</url-pattern>
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116 <servlet-name>TcoffeeWS</servlet-name>
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117 <url-pattern>/TcoffeeWS</url-pattern>
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121 <servlet-name>ProbconsWS</servlet-name>
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122 <url-pattern>/ProbconsWS</url-pattern>
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126 <servlet-name>AAConWS</servlet-name>
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127 <url-pattern>/AAConWS</url-pattern>
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131 <servlet-name>JronnWS</servlet-name>
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132 <url-pattern>/JronnWS</url-pattern>
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136 <servlet-name>DisemblWS</servlet-name>
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137 <url-pattern>/DisemblWS</url-pattern>
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141 <servlet-name>GlobPlotWS</servlet-name>
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142 <url-pattern>/GlobPlotWS</url-pattern>
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145 <security-constraint>
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146 <web-resource-collection>
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147 <web-resource-name>Administrator pages</web-resource-name>
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148 <!-- Prohibit access to any resources -->
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149 <url-pattern>/DisplayStat</url-pattern>
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150 <url-pattern>/Joblist</url-pattern>
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151 <url-pattern>/conf/*</url-pattern>
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152 <url-pattern>/binaries/*</url-pattern>
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153 <url-pattern>/jobsout/*</url-pattern>
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154 <url-pattern>/testsrc/*</url-pattern>
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155 <url-pattern>/lib/*</url-pattern>
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156 <url-pattern>/test-output/*</url-pattern>
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157 <!-- No http-method means all methods are constrained -->
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158 </web-resource-collection>
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160 <role-name>admin</role-name>
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162 </security-constraint>
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164 <!-- unsupported HTTP methods -->
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165 <security-constraint>
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166 <web-resource-collection>
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167 <web-resource-name>unsupported HTTP methods</web-resource-name>
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168 <url-pattern>/*</url-pattern>
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169 <http-method>PUT</http-method>
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170 <http-method>DELETE</http-method>
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171 <http-method>TRACE</http-method>
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172 <http-method>HEAD</http-method>
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173 <http-method>OPTIONS</http-method>
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174 </web-resource-collection>
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176 </security-constraint>
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177 <!-- Define the Login Configuration for this Application -->
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179 <auth-method>BASIC</auth-method>
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180 <realm-name>JABAWS administrators</realm-name>
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183 <!-- Security roles referenced by this web application -->
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186 The role that is required to log in and view JABAWS internals
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188 <role-name>admin</role-name>
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