1 <web-app xmlns="http://java.sun.com/xml/ns/j2ee"
\r
2 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
\r
3 xsi:schemaLocation="http://java.sun.com/xml/ns/j2ee http://java.sun.com/xml/ns/j2ee/web-app_2_4.xsd"
\r
6 <display-name>JABAWS</display-name>
\r
7 <description>JAva Bioinformatics Analysis Web Services (JABAWS) v.2</description>
\r
10 <listener-class>compbio.ws.server.ShutdownEngines</listener-class>
\r
13 <listener-class>compbio.stat.servlet.StatisticCollector</listener-class>
\r
16 <listener-class>com.sun.xml.ws.transport.http.servlet.WSServletContextListener</listener-class>
\r
19 <!-- Session timeout in minutes -->
\r
21 <session-timeout>20</session-timeout>
\r
25 <description>Display pre-calculated accounting info</description>
\r
26 <servlet-name>DisplayStat</servlet-name>
\r
27 <servlet-class>compbio.stat.servlet.DisplayStat</servlet-class>
\r
31 <description>Display job list</description>
\r
32 <servlet-name>Joblist</servlet-name>
\r
33 <servlet-class>compbio.stat.servlet.Joblist</servlet-class>
\r
37 <description>Display monthly summary statistics</description>
\r
38 <servlet-name>AnnualStat</servlet-name>
\r
39 <servlet-class>compbio.stat.servlet.AnnualStat</servlet-class>
\r
43 <servlet-name>ClustalWS</servlet-name>
\r
44 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
45 <load-on-startup>1</load-on-startup>
\r
49 <servlet-name>MuscleWS</servlet-name>
\r
50 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
51 <load-on-startup>1</load-on-startup>
\r
55 <servlet-name>MafftWS</servlet-name>
\r
56 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
57 <load-on-startup>1</load-on-startup>
\r
61 <servlet-name>TcoffeeWS</servlet-name>
\r
62 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
63 <load-on-startup>1</load-on-startup>
\r
67 <servlet-name>ProbconsWS</servlet-name>
\r
68 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
69 <load-on-startup>1</load-on-startup>
\r
73 <servlet-name>AAConWS</servlet-name>
\r
74 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
75 <load-on-startup>1</load-on-startup>
\r
79 <servlet-name>JronnWS</servlet-name>
\r
80 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
81 <load-on-startup>1</load-on-startup>
\r
85 <servlet-name>DisemblWS</servlet-name>
\r
86 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
87 <load-on-startup>1</load-on-startup>
\r
91 <servlet-name>GlobPlotWS</servlet-name>
\r
92 <servlet-class>com.sun.xml.ws.transport.http.servlet.WSServlet</servlet-class>
\r
93 <load-on-startup>1</load-on-startup>
\r
97 <servlet-name>DisplayStat</servlet-name>
\r
98 <url-pattern>/DisplayStat</url-pattern>
\r
102 <servlet-name>AnnualStat</servlet-name>
\r
103 <url-pattern>/AnnualStat</url-pattern>
\r
104 </servlet-mapping>
\r
107 <servlet-name>Joblist</servlet-name>
\r
108 <url-pattern>/Joblist</url-pattern>
\r
109 </servlet-mapping>
\r
112 <servlet-name>ClustalWS</servlet-name>
\r
113 <url-pattern>/ClustalWS</url-pattern>
\r
117 <servlet-name>MuscleWS</servlet-name>
\r
118 <url-pattern>/MuscleWS</url-pattern>
\r
122 <servlet-name>MafftWS</servlet-name>
\r
123 <url-pattern>/MafftWS</url-pattern>
\r
127 <servlet-name>TcoffeeWS</servlet-name>
\r
128 <url-pattern>/TcoffeeWS</url-pattern>
\r
132 <servlet-name>ProbconsWS</servlet-name>
\r
133 <url-pattern>/ProbconsWS</url-pattern>
\r
137 <servlet-name>AAConWS</servlet-name>
\r
138 <url-pattern>/AAConWS</url-pattern>
\r
142 <servlet-name>JronnWS</servlet-name>
\r
143 <url-pattern>/JronnWS</url-pattern>
\r
147 <servlet-name>DisemblWS</servlet-name>
\r
148 <url-pattern>/DisemblWS</url-pattern>
\r
152 <servlet-name>GlobPlotWS</servlet-name>
\r
153 <url-pattern>/GlobPlotWS</url-pattern>
\r
156 <security-constraint>
\r
157 <web-resource-collection>
\r
158 <web-resource-name>Administrator pages</web-resource-name>
\r
159 <!-- Prohibit access to any resources -->
\r
160 <url-pattern>/DisplayStat</url-pattern>
\r
161 <url-pattern>/Joblist</url-pattern>
\r
162 <url-pattern>/AnnualStat</url-pattern>
\r
163 <url-pattern>/conf/*</url-pattern>
\r
164 <url-pattern>/binaries/*</url-pattern>
\r
165 <url-pattern>/jobsout/*</url-pattern>
\r
166 <url-pattern>/testsrc/*</url-pattern>
\r
167 <url-pattern>/lib/*</url-pattern>
\r
168 <url-pattern>/test-output/*</url-pattern>
\r
169 <!-- No http-method means all methods are constrained -->
\r
170 </web-resource-collection>
\r
172 <role-name>admin</role-name>
\r
174 </security-constraint>
\r
176 <!-- unsupported HTTP methods -->
\r
177 <security-constraint>
\r
178 <web-resource-collection>
\r
179 <web-resource-name>unsupported HTTP methods</web-resource-name>
\r
180 <url-pattern>/*</url-pattern>
\r
181 <http-method>PUT</http-method>
\r
182 <http-method>DELETE</http-method>
\r
183 <http-method>TRACE</http-method>
\r
184 <http-method>HEAD</http-method>
\r
185 <http-method>OPTIONS</http-method>
\r
186 </web-resource-collection>
\r
188 </security-constraint>
\r
189 <!-- Define the Login Configuration for this Application -->
\r
191 <auth-method>BASIC</auth-method>
\r
192 <realm-name>JABAWS administrators</realm-name>
\r
195 <!-- Security roles referenced by this web application -->
\r
198 The role that is required to log in and view JABAWS internals
\r
200 <role-name>admin</role-name>
\r