1 Clazz.declarePackage ("jalview.appletgui");
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2 Clazz.load (["awt2swing.Panel", "java.awt.event.ActionListener", "$.MouseListener", "$.MouseMotionListener"], "jalview.appletgui.AnnotationLabels", ["awt2swing.Checkbox", "$.CheckboxMenuItem", "$.Frame", "$.MenuItem", "$.PopupMenu", "jalview.analysis.AlignmentUtils", "jalview.appletgui.AlignFrame", "$.CutAndPasteTransfer", "$.EditNameDialog", "$.PaintRefresher", "$.Tooltip", "jalview.bin.JalviewLite", "jalview.datamodel.AlignmentAnnotation", "$.SequenceGroup", "jalview.util.MessageManager", "$.ParseHtmlBodyAndLinks", "java.awt.Color", "$.Dimension", "$.FlowLayout", "java.awt.event.ItemListener", "java.lang.StringBuffer", "java.util.Arrays", "$.Collections", "$.Vector"], function () {
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3 c$ = Clazz.decorateAsClass (function () {
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8 this.resizing = false;
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11 this.scrollOffset = 0;
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12 this.selectedRow = -1;
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13 this.tooltip = null;
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14 this.hasHiddenRows = false;
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15 this.resizePanel = false;
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16 this.dragEvent = null;
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17 this.dragCancelled = false;
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18 Clazz.instantialize (this, arguments);
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19 }, jalview.appletgui, "AnnotationLabels", awt2swing.Panel, [java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener]);
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20 Clazz.makeConstructor (c$,
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22 Clazz.superConstructor (this, jalview.appletgui.AnnotationLabels, []);
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25 this.setLayout (null);
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26 this.addMouseListener (this);
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27 this.addMouseMotionListener (this);
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28 }, "jalview.appletgui.AlignmentPanel");
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29 Clazz.makeConstructor (c$,
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31 Clazz.superConstructor (this, jalview.appletgui.AnnotationLabels, []);
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33 }, "jalview.appletgui.AlignViewport");
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34 Clazz.defineMethod (c$, "setScrollOffset",
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35 function (y, repaint) {
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36 this.scrollOffset = y;
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40 Clazz.defineMethod (c$, "getSelectedRow",
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43 var aa = this.ap.av.getAlignment ().getAlignmentAnnotation ();
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47 for (var i = 0; i < aa.length; i++) {
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49 if (!aa[i].visible) {
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51 }height += aa[i].height;
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58 Clazz.overrideMethod (c$, "actionPerformed",
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60 var aa = this.av.getAlignment ().getAlignmentAnnotation ();
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61 if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.ADDNEW)) {
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62 var newAnnotation = new jalview.datamodel.AlignmentAnnotation ("", null, new Array (this.ap.av.getAlignment ().getWidth ()));
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63 if (!this.editLabelDescription (newAnnotation)) {
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65 }this.ap.av.getAlignment ().addAnnotation (newAnnotation);
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66 this.ap.av.getAlignment ().setAnnotationIndex (newAnnotation, 0);
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67 } else if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.EDITNAME)) {
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68 this.editLabelDescription (aa[this.selectedRow]);
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69 } else if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.HIDE)) {
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70 aa[this.selectedRow].visible = false;
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71 } else if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.SHOWALL)) {
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72 for (var i = 0; i < aa.length; i++) {
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73 aa[i].visible = (aa[i].annotations == null) ? false : true;
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75 } else if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.OUTPUT_TEXT)) {
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76 var cap = new jalview.appletgui.CutAndPasteTransfer (false, this.ap.alignFrame);
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77 var frame = new awt2swing.Frame ();
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79 jalview.bin.JalviewLite.addFrame (frame, this.ap.alignFrame.getTitle () + " - " + aa[this.selectedRow].label, 500, 100);
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80 cap.setText (aa[this.selectedRow].toString ());
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81 } else if (evt.getActionCommand ().equals (jalview.appletgui.AnnotationLabels.COPYCONS_SEQ)) {
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82 var cons = this.av.getConsensusSeq ();
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84 this.copy_annotseqtoclipboard (cons);
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86 }, "java.awt.event.ActionEvent");
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87 Clazz.defineMethod (c$, "refresh",
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89 this.ap.annotationPanel.adjustPanelHeight ();
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90 this.setSize (this.getSize ().width, this.ap.annotationPanel.getSize ().height);
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91 this.ap.validate ();
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92 this.ap.paintAlignment (true);
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94 Clazz.defineMethod (c$, "editLabelDescription",
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95 function (annotation) {
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96 var padGaps = new awt2swing.Checkbox ("Fill Empty Gaps With \"" + this.ap.av.getGapCharacter () + "\"", annotation.padGaps);
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97 var dialog = new jalview.appletgui.EditNameDialog (annotation.label, annotation.description, " Annotation Label", "Annotation Description", this.ap.alignFrame, "Edit Annotation Name / Description", 500, 180, false);
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98 var empty = new awt2swing.Panel ( new java.awt.FlowLayout ());
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99 empty.add (padGaps);
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100 dialog.add (empty);
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102 dialog.setVisible (true);
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103 if (dialog.accept) {
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104 annotation.label = dialog.getName ();
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105 annotation.description = dialog.getDescription ();
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106 annotation.setPadGaps (padGaps.getState (), this.av.getGapCharacter ());
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111 }}, "jalview.datamodel.AlignmentAnnotation");
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112 Clazz.overrideMethod (c$, "mouseMoved",
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114 this.resizePanel = evt.getY () < 10 && evt.getX () < 14;
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115 var row = this.getSelectedRow (evt.getY () + this.scrollOffset);
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117 var phb = new jalview.util.ParseHtmlBodyAndLinks (this.av.getAlignment ().getAlignmentAnnotation ()[row].getDescription (true), true, "\n");
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118 if (this.tooltip == null) {
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119 this.tooltip = new jalview.appletgui.Tooltip (phb.getNonHtmlContent (), this);
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121 this.tooltip.setTip (phb.getNonHtmlContent ());
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122 }} else if (this.tooltip != null) {
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123 this.tooltip.setTip ("");
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124 }}, "java.awt.event.MouseEvent");
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125 Clazz.defineMethod (c$, "cancelDrag",
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127 this.dragEvent = null;
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128 this.dragCancelled = true;
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130 Clazz.overrideMethod (c$, "mouseDragged",
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132 if (this.dragCancelled) {
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134 };this.dragEvent = evt;
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135 if (this.resizePanel) {
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136 var d = this.ap.annotationPanelHolder.getSize ();
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137 var e = this.ap.annotationSpaceFillerHolder.getSize ();
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138 var f = this.ap.seqPanelHolder.getSize ();
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139 var dif = evt.getY () - this.oldY;
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140 dif /= this.ap.av.getCharHeight ();
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141 dif *= this.ap.av.getCharHeight ();
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142 if ((d.height - dif) > 20 && (f.height + dif) > 20) {
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143 this.ap.annotationPanel.setSize (d.width, d.height - dif);
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144 this.setSize ( new java.awt.Dimension (e.width, d.height - dif));
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145 this.ap.annotationSpaceFillerHolder.setSize ( new java.awt.Dimension (e.width, d.height - dif));
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146 this.ap.annotationPanelHolder.setSize ( new java.awt.Dimension (d.width, d.height - dif));
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147 this.ap.apvscroll.setValues (this.ap.apvscroll.getValue (), d.height - dif, 0, this.av.calcPanelHeight ());
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149 this.ap.seqPanelHolder.setPreferredSize (f);
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150 this.ap.setScrollValues (this.av.getStartRes (), this.av.getStartSeq ());
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151 this.ap.validate ();
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152 this.ap.addNotify ();
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155 if ((diff = 6 - evt.getY ()) > 0) {
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156 this.ap.apvscroll.setValue (this.ap.apvscroll.getValue () - diff);
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157 this.ap.adjustmentValueChanged (null);
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158 } else if ((0 < (diff = 6 - this.ap.annotationSpaceFillerHolder.getSize ().height + evt.getY ()))) {
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159 this.ap.apvscroll.setValue (this.ap.apvscroll.getValue () + diff);
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160 this.ap.adjustmentValueChanged (null);
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162 }}, "java.awt.event.MouseEvent");
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163 Clazz.overrideMethod (c$, "mouseClicked",
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165 }, "java.awt.event.MouseEvent");
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166 Clazz.overrideMethod (c$, "mouseReleased",
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168 if (!this.resizePanel && !this.dragCancelled) {
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169 var start = this.selectedRow;
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170 var end = this.getSelectedRow (evt.getY () + this.scrollOffset);
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171 if (start > -1 && start != end) {
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172 var startAA = this.ap.av.getAlignment ().getAlignmentAnnotation ()[start];
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174 end = this.ap.av.getAlignment ().getAlignmentAnnotation ().length - 1;
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175 }var endAA = this.ap.av.getAlignment ().getAlignmentAnnotation ()[end];
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176 this.ap.av.getAlignment ().getAlignmentAnnotation ()[end] = startAA;
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177 this.ap.av.getAlignment ().getAlignmentAnnotation ()[start] = endAA;
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178 }}this.resizePanel = false;
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179 this.dragEvent = null;
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180 this.dragCancelled = false;
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182 this.ap.annotationPanel.repaint ();
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183 }, "java.awt.event.MouseEvent");
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184 Clazz.overrideMethod (c$, "mouseEntered",
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186 if (evt.getY () < 10 && evt.getX () < 14) {
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187 this.resizePanel = true;
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189 }}, "java.awt.event.MouseEvent");
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190 Clazz.overrideMethod (c$, "mouseExited",
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192 this.dragCancelled = false;
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193 if (this.dragEvent == null) {
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194 this.resizePanel = false;
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196 if (!this.resizePanel) {
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197 this.dragEvent = null;
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199 }, "java.awt.event.MouseEvent");
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200 Clazz.overrideMethod (c$, "mousePressed",
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202 this.oldY = evt.getY ();
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203 if (this.resizePanel) {
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205 }this.dragCancelled = false;
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206 this.selectedRow = this.getSelectedRow (evt.getY () + this.scrollOffset);
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207 var aa = this.ap.av.getAlignment ().getAlignmentAnnotation ();
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208 if ((evt.getModifiers () & 4) == 4) {
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209 var popup = new awt2swing.PopupMenu (jalview.util.MessageManager.getString ("label.annotations"));
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210 var item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.ADDNEW);
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211 item.addActionListener (this);
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213 if (this.selectedRow < 0) {
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214 if (this.hasHiddenRows) {
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215 item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.SHOWALL);
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216 item.addActionListener (this);
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219 popup.show (this, evt.getX (), evt.getY ());
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221 }item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.EDITNAME);
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222 item.addActionListener (this);
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224 item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.HIDE);
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225 item.addActionListener (this);
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227 if (this.selectedRow < aa.length) {
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228 if (aa[this.selectedRow].sequenceRef != null) {
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229 var label = aa[this.selectedRow].label;
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230 var hideType = new awt2swing.MenuItem (jalview.util.MessageManager.getString ("label.hide_all") + " " + label);
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231 hideType.addActionListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$1") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$1, this, Clazz.cloneFinals ("label", label))));
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232 popup.add (hideType);
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233 }}if (this.hasHiddenRows) {
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234 item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.SHOWALL);
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235 item.addActionListener (this);
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238 item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.OUTPUT_TEXT);
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239 item.addActionListener (this);
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241 if (this.selectedRow < aa.length) {
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242 if (aa[this.selectedRow].autoCalculated) {
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243 if (aa[this.selectedRow].label.indexOf ("Consensus") > -1) {
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244 popup.addSeparator ();
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245 var cbmi = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.ignore_gaps_consensus"), (aa[this.selectedRow].groupRef != null) ? aa[this.selectedRow].groupRef.getIgnoreGapsConsensus () : this.ap.av.isIgnoreGapsConsensus ());
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246 var aaa = aa[this.selectedRow];
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247 cbmi.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$2") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$2$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$2, this, Clazz.cloneFinals ("aaa", aaa, "cbmi", cbmi))));
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249 if (aaa.groupRef != null) {
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250 var chist = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.show_group_histogram"), aa[this.selectedRow].groupRef.isShowConsensusHistogram ());
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251 chist.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$3") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$3$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$3, this, Clazz.cloneFinals ("aaa", aaa, "chist", chist))));
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253 var cprofl = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.show_group_logo"), aa[this.selectedRow].groupRef.isShowSequenceLogo ());
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254 cprofl.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$4") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$4$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$4, this, Clazz.cloneFinals ("aaa", aaa, "cprofl", cprofl))));
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255 popup.add (cprofl);
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256 var cprofn = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.normalise_group_logo"), aa[this.selectedRow].groupRef.isNormaliseSequenceLogo ());
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257 cprofn.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$5") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$5$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$5, this, Clazz.cloneFinals ("aaa", aaa, "cprofn", cprofn))));
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258 popup.add (cprofn);
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260 var chist = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.show_histogram"), this.av.isShowConsensusHistogram ());
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261 chist.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$6") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$6$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$6, this, Clazz.cloneFinals ("chist", chist))));
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263 var cprof = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.show_logo"), this.av.isShowSequenceLogo ());
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264 cprof.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$7") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$7$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$7, this, Clazz.cloneFinals ("cprof", cprof))));
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266 var cprofn = new awt2swing.CheckboxMenuItem (jalview.util.MessageManager.getString ("label.normalise_logo"), this.av.isNormaliseSequenceLogo ());
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267 cprofn.addItemListener (((Clazz.isClassDefined ("jalview.appletgui.AnnotationLabels$8") ? 0 : jalview.appletgui.AnnotationLabels.$AnnotationLabels$8$ ()), Clazz.innerTypeInstance (jalview.appletgui.AnnotationLabels$8, this, Clazz.cloneFinals ("cprofn", cprofn))));
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268 popup.add (cprofn);
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269 }item = new awt2swing.MenuItem (jalview.appletgui.AnnotationLabels.COPYCONS_SEQ);
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270 item.addActionListener (this);
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272 }}}popup.show (this, evt.getX (), evt.getY ());
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274 if (this.selectedRow > -1 && this.selectedRow < aa.length) {
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275 if (aa[this.selectedRow].groupRef != null) {
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276 if (evt.getClickCount () >= 2) {
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277 this.ap.seqPanel.ap.idPanel.highlightSearchResults (null);
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278 this.ap.av.setSelectionGroup (aa[this.selectedRow].groupRef);
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279 this.ap.av.sendSelection ();
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280 this.ap.paintAlignment (false);
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281 jalview.appletgui.PaintRefresher.Refresh (this.ap, this.ap.av.getSequenceSetId ());
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283 this.ap.seqPanel.ap.idPanel.highlightSearchResults (aa[this.selectedRow].groupRef.getSequences (null));
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285 } else if (aa[this.selectedRow].sequenceRef != null) {
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286 if (evt.getClickCount () == 1) {
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287 this.ap.seqPanel.ap.idPanel.highlightSearchResults (java.util.Arrays.asList ( Clazz.newArray (-1, [aa[this.selectedRow].sequenceRef])));
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288 } else if (evt.getClickCount () >= 2) {
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289 this.ap.seqPanel.ap.idPanel.highlightSearchResults (null);
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290 var sg = this.ap.av.getSelectionGroup ();
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292 if (!(evt.isControlDown () || evt.isShiftDown ())) {
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293 sg = new jalview.datamodel.SequenceGroup (sg);
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295 sg.addSequence (aa[this.selectedRow].sequenceRef, false);
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297 if (evt.isControlDown ()) {
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298 sg.addOrRemove (aa[this.selectedRow].sequenceRef, true);
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300 sg.addSequence (aa[this.selectedRow].sequenceRef, true);
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302 sg = new jalview.datamodel.SequenceGroup ();
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303 sg.setStartRes (0);
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304 sg.setEndRes (this.ap.av.getAlignment ().getWidth () - 1);
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305 sg.addSequence (aa[this.selectedRow].sequenceRef, false);
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306 }this.ap.av.setSelectionGroup (sg);
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307 this.ap.paintAlignment (false);
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308 jalview.appletgui.PaintRefresher.Refresh (this.ap, this.ap.av.getSequenceSetId ());
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309 this.ap.av.sendSelection ();
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310 }}}}}, "java.awt.event.MouseEvent");
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311 Clazz.defineMethod (c$, "copy_annotseqtoclipboard",
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313 if (sq == null || sq.getLength () < 1) {
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315 }jalview.appletgui.AlignFrame.copiedSequences = new StringBuffer ();
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316 jalview.appletgui.AlignFrame.copiedSequences.append (sq.getName () + "\t" + sq.getStart () + "\t" + sq.getEnd () + "\t" + sq.getSequenceAsString () + "\n");
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317 if (this.av.hasHiddenColumns ()) {
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318 jalview.appletgui.AlignFrame.copiedHiddenColumns = new java.util.Vector ();
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319 for (var region, $region = this.av.getColumnSelection ().getHiddenColumns ().iterator (); $region.hasNext () && ((region = $region.next ()) || true);) {
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320 jalview.appletgui.AlignFrame.copiedHiddenColumns.addElement ( Clazz.newIntArray (-1, [region[0], region[1]]));
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322 }}, "jalview.datamodel.SequenceI");
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323 Clazz.overrideMethod (c$, "paintComponent",
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325 if (this.av.getWrapAlignment () || !this.av.isShowAnnotation ()) return;
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326 var w = this.getSize ().width;
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327 var h = this.getSize ().height;
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328 if (this.image == null || w != this.image.getWidth (this) || h != this.image.getHeight (this)) {
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329 this.image = this.createImage (w, this.ap.annotationPanel.getSize ().height);
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330 }this.drawComponent (this.image.getGraphics (), w);
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331 g.drawImage (this.image, 0, 0, this);
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332 }, "java.awt.Graphics");
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333 Clazz.defineMethod (c$, "drawComponent",
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334 function (g, width) {
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335 g.setFont (this.av.getFont ());
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336 var fm = g.getFontMetrics (this.av.getFont ());
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337 g.setColor (java.awt.Color.white);
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338 g.fillRect (0, 0, this.getSize ().width, this.getSize ().height);
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339 g.translate (0, -this.scrollOffset);
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340 g.setColor (java.awt.Color.black);
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341 var aa = this.av.getAlignment ().getAlignmentAnnotation ();
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343 var fy = g.getFont ().getSize ();
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347 this.hasHiddenRows = false;
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348 for (var i = 0; i < aa.length; i++) {
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349 if (!aa[i].visible) {
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350 this.hasHiddenRows = true;
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352 }x = width - fm.stringWidth (aa[i].label) - 3;
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354 offset = Clazz.doubleToInt (-(aa[i].height - fy) / 2);
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355 g.drawString (aa[i].label, x, y + offset);
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357 }g.translate (0, +this.scrollOffset);
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358 if (this.resizePanel) {
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359 g.setColor (java.awt.Color.red);
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361 g.drawLine (2, 8, 5, 2);
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362 g.drawLine (5, 2, 8, 8);
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363 } else if (!this.dragCancelled && this.dragEvent != null && aa != null) {
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364 g.setColor (java.awt.Color.lightGray);
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365 g.drawString (aa[this.selectedRow].label, this.dragEvent.getX (), this.dragEvent.getY ());
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366 }if (!this.av.getWrapAlignment () && ((aa == null) || (aa.length < 1))) {
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367 g.setColor (java.awt.Color.black);
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368 g.drawString (jalview.util.MessageManager.getString ("label.right_click"), 2, 8);
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369 g.drawString (jalview.util.MessageManager.getString ("label.to_add_annotation"), 2, 18);
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370 }}, "java.awt.Graphics,~N");
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371 c$.$AnnotationLabels$1$ = function () {
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373 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$1", null, java.awt.event.ActionListener);
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374 Clazz.overrideMethod (c$, "actionPerformed",
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376 jalview.analysis.AlignmentUtils.showOrHideSequenceAnnotations (this.b$["jalview.appletgui.AnnotationLabels"].ap.av.getAlignment (), java.util.Collections.singleton (this.f$.label), null, false, false);
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377 this.b$["jalview.appletgui.AnnotationLabels"].refresh ();
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378 }, "java.awt.event.ActionEvent");
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381 c$.$AnnotationLabels$2$ = function () {
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383 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$2", null, java.awt.event.ItemListener);
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384 Clazz.overrideMethod (c$, "itemStateChanged",
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386 if (this.f$.aaa.groupRef != null) {
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387 this.f$.aaa.groupRef.setIgnoreGapsConsensus (this.f$.cbmi.getState ());
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389 this.b$["jalview.appletgui.AnnotationLabels"].ap.av.setIgnoreGapsConsensus (this.f$.cbmi.getState (), this.b$["jalview.appletgui.AnnotationLabels"].ap);
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390 }this.b$["jalview.appletgui.AnnotationLabels"].ap.paintAlignment (true);
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391 }, "java.awt.event.ItemEvent");
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394 c$.$AnnotationLabels$3$ = function () {
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396 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$3", null, java.awt.event.ItemListener);
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397 Clazz.overrideMethod (c$, "itemStateChanged",
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399 this.f$.aaa.groupRef.setShowConsensusHistogram (this.f$.chist.getState ());
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400 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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401 }, "java.awt.event.ItemEvent");
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404 c$.$AnnotationLabels$4$ = function () {
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406 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$4", null, java.awt.event.ItemListener);
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407 Clazz.overrideMethod (c$, "itemStateChanged",
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409 this.f$.aaa.groupRef.setshowSequenceLogo (this.f$.cprofl.getState ());
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410 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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411 }, "java.awt.event.ItemEvent");
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414 c$.$AnnotationLabels$5$ = function () {
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416 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$5", null, java.awt.event.ItemListener);
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417 Clazz.overrideMethod (c$, "itemStateChanged",
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419 this.f$.aaa.groupRef.setshowSequenceLogo (true);
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420 this.f$.aaa.groupRef.setNormaliseSequenceLogo (this.f$.cprofn.getState ());
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421 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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422 }, "java.awt.event.ItemEvent");
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425 c$.$AnnotationLabels$6$ = function () {
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427 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$6", null, java.awt.event.ItemListener);
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428 Clazz.overrideMethod (c$, "itemStateChanged",
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430 this.b$["jalview.appletgui.AnnotationLabels"].av.setShowConsensusHistogram (this.f$.chist.getState ());
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431 this.b$["jalview.appletgui.AnnotationLabels"].ap.alignFrame.showConsensusHistogram.setState (this.f$.chist.getState ());
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432 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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433 }, "java.awt.event.ItemEvent");
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436 c$.$AnnotationLabels$7$ = function () {
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438 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$7", null, java.awt.event.ItemListener);
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439 Clazz.overrideMethod (c$, "itemStateChanged",
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441 this.b$["jalview.appletgui.AnnotationLabels"].av.setShowSequenceLogo (this.f$.cprof.getState ());
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442 this.b$["jalview.appletgui.AnnotationLabels"].ap.alignFrame.showSequenceLogo.setState (this.f$.cprof.getState ());
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443 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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444 }, "java.awt.event.ItemEvent");
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447 c$.$AnnotationLabels$8$ = function () {
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449 c$ = Clazz.declareAnonymous (jalview.appletgui, "AnnotationLabels$8", null, java.awt.event.ItemListener);
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450 Clazz.overrideMethod (c$, "itemStateChanged",
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452 this.b$["jalview.appletgui.AnnotationLabels"].av.setShowSequenceLogo (true);
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453 this.b$["jalview.appletgui.AnnotationLabels"].ap.alignFrame.normSequenceLogo.setState (this.f$.cprofn.getState ());
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454 this.b$["jalview.appletgui.AnnotationLabels"].av.setNormaliseSequenceLogo (this.f$.cprofn.getState ());
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455 this.b$["jalview.appletgui.AnnotationLabels"].ap.repaint ();
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456 }, "java.awt.event.ItemEvent");
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459 Clazz.defineStatics (c$,
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460 "ADDNEW", "Add New Row",
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461 "EDITNAME", "Edit Label/Description",
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462 "HIDE", "Hide This Row",
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463 "SHOWALL", "Show All Hidden Rows",
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464 "OUTPUT_TEXT", "Show Values In Textbox",
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465 "COPYCONS_SEQ", "Copy Consensus Sequence");
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