1 /******************************************************************
2 Copyright 2006 by Michael Farrar. All rights reserved.
3 This program may not be sold or incorporated into a commercial product,
4 in whole or in part, without written consent of Michael Farrar. For
5 further information regarding permission for use or reproduction, please
6 contact: Michael Farrar at farrar.michael@gmail.com.
7 *******************************************************************/
10 Written by Michael Farrar, 2006.
11 Please send bug reports and/or suggestions to farrar.michael@gmail.com.
14 #ifndef SMITH_WATERMAN_SSE2_H
15 #define SMITH_WATERMAN_SSE2_H
18 smith_waterman_sse2_word(const unsigned char * query_sequence,
19 unsigned short * query_profile_word,
20 const int query_length,
21 const unsigned char * db_sequence,
23 unsigned short gap_open,
24 unsigned short gap_extend,
25 struct f_struct * f_str);
29 smith_waterman_sse2_byte(const unsigned char * query_sequence,
30 unsigned char * query_profile_byte,
31 const int query_length,
32 const unsigned char * db_sequence,
35 unsigned char gap_open,
36 unsigned char gap_extend,
37 struct f_struct * f_str);
39 #endif /* SMITH_WATERMAN_SSE2_H */