1 /***********************************************
2 * # Copyright 2009-2010. Liu Yongchao
3 * # Contact: Liu Yongchao, School of Computer Engineering,
4 * # Nanyang Technological University.
5 * # Emails: liuy0039@ntu.edu.sg; nkcslyc@hotmail.com
7 * # GPL version 3.0 applies.
9 * ************************************************/
11 #ifndef _MSA_CLUSTER_TREE_H
12 #define _MSA_CLUSTER_TREE_H
14 #include "MSAGuideTree.h"
16 class MSAClusterTree: public MSAGuideTree {
18 MSAClusterTree(MSA* msa, VVF& distMatrix, int numSeqs);
21 //construct the cluster tree
24 //generate the cluster tree
25 void generateClusterTree();