2 CXXOBJS = MSA.o MSAGuideTree.o MSAClusterTree.o MSAPartProbs.o MSAReadMatrix.o main.o
6 COMMON_FLAGS = -O3 $(OPENMP) -Wall -funroll-loops -I . -I /usr/include
7 CXXFLAGS = $(COMMON_FLAGS)
12 $(CXX) $(CXXFLAGS) -o $(EXEC) $(CXXOBJS) $(NVCCOBJS) $(NVCCLIBS)