binaries/src/ViennaRNA/H/ProfileAln.h

   1 #ifndef __VIENNA_RNA_PACKAGE_PROFILEALN_H__
   2 #define __VIENNA_RNA_PACKAGE_PROFILEALN_H__
   3
   4 float profile_aln(const float *T1,
   5                   const char *seq1,
   6                   const float *T2,
   7                   const char *seq2);
   8
   9 int set_paln_params(double gap_open,
  10                     double gap_ext,
  11                     double seqweight,
  12                     int free_ends);
  13
  14 #endif