binaries/src/ViennaRNA/H/svm_utils.h

   1 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
   2 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
   3
   4 typedef struct svm_model{
   5   struct svm_parameter param;
   6   int nr_class;
   7   int l;
   8   struct svm_node **SV;
   9   double **sv_coef;
  10   double *rho;
  11   double *probA;
  12   double *probB;
  13   int *label;
  14   int *nSV;
  15   int free_sv;
  16 } svm_model;
  17
  18 extern  char *avg_model_string;
  19 extern  char *sd_model_string;
  20
  21 float     get_z(char *sequence,
  22                 double energy);
  23 double    avg_regression (int N,
  24                           int A,
  25                           int C,
  26                           int G,
  27                           int T,
  28                           struct svm_model *avg_model,
  29                           int *info );
  30 double    sd_regression  (int N,
  31                           int A,
  32                           int C,
  33                           int G,
  34                           int T,
  35                           struct svm_model  *sd_model);
  36 double    minimal_sd     (int N,
  37                           int A,
  38                           int C,
  39                           int G,
  40                           int T);
  41 svm_model *svm_load_model_string(char *modelString);
  42 int       *get_seq_composition( short *S,
  43                                 unsigned int start,
  44                                 unsigned int stop);
  45
  46 #endif