binaries/src/ViennaRNA/Progs/Makefile.am

   1
   2
   3 if WITH_LIBSVM
   4   RNALfold_LINK = ${CXXLD} \
   5                   $(AM_CXXFLAGS) $(CXXFLAGS) \
   6                   $(AM_LDFLAGS) $(LDFLAGS) -o $@
   7 else
   8   RNALfold_LINK = ${CCLD} \
   9                   $(AM_CFLAGS) $(CFLAGS) \
  10                   $(AM_LDFLAGS) $(LDFLAGS) -o $@
  11 endif
  12
  13
  14 bin_PROGRAMS = RNAfold RNAeval RNAheat RNApdist RNAdistance RNAinverse \
  15     RNAplot RNAsubopt RNALfold RNAcofold RNApaln RNAduplex \
  16     RNAalifold RNAplfold RNAup RNAaliduplex RNALalifold RNA2Dfold \
  17     RNAparconv RNAPKplex RNAplex RNAsnoop
  18
  19 LDADD = $(OPENMP_CFLAGS) ../lib/libRNA.a -lm
  20
  21 AM_CFLAGS = $(OPENMP_CFLAGS)
  22
  23 AM_CPPFLAGS = -I$(srcdir)/../H -I$(srcdir)/../lib
  24
  25 GENGETOPT_CMDL =  RNAfold_cmdl.c RNAfold_cmdl.h\
  26               RNAalifold_cmdl.c RNAalifold_cmdl.h\
  27               RNAcofold_cmdl.c  RNAcofold_cmdl.h\
  28               RNAup_cmdl.c  RNAup_cmdl.h\
  29               RNALfold_cmdl.c RNALfold_cmdl.h\
  30               RNALalifold_cmdl.c RNALalifold_cmdl.h\
  31               RNAplfold_cmdl.c RNAplfold_cmdl.h\
  32               RNAduplex_cmdl.c RNAduplex_cmdl.h\
  33               RNAaliduplex_cmdl.c RNAaliduplex_cmdl.h\
  34               RNAeval_cmdl.c RNAeval_cmdl.h\
  35               RNAheat_cmdl.c RNAheat_cmdl.h\
  36               RNAsubopt_cmdl.c RNAsubopt_cmdl.h\
  37               RNA2Dfold_cmdl.c RNA2Dfold_cmdl.h\
  38               RNAparconv_cmdl.c RNAparconv_cmdl.h\
  39               RNAinverse_cmdl.c RNAinverse_cmdl.h\
  40               RNApaln_cmdl.c RNApaln_cmdl.h\
  41               RNAplot_cmdl.c RNAplot_cmdl.h\
  42               RNAPKplex_cmdl.c RNAPKplex_cmdl.h\
  43               RNAplex_cmdl.c RNAplex_cmdl.h\
  44               RNAsnoop_cmdl.c RNAsnoop_cmdl.h\
  45               RNAdistance_cmdl.c RNAdistance_cmdl.h\
  46               RNApdist_cmdl.c RNApdist_cmdl.h
  47
  48 GENGETOPT_FILES =  RNAfold.ggo RNAalifold.ggo RNAcofold.ggo\
  49               RNAup.ggo RNALfold.ggo RNALalifold.ggo\
  50               RNAplfold.ggo RNAduplex.ggo RNAaliduplex.ggo\
  51               RNAeval.ggo RNAheat.ggo RNAsubopt.ggo RNA2Dfold.ggo\
  52               RNAparconv.ggo RNAinverse.ggo RNApaln.ggo RNAplot.ggo\
  53               RNAPKplex.ggo RNAplex.ggo RNAsnoop.ggo RNAdistance.ggo\
  54               RNApdist.ggo
  55
  56 EXTRA_DIST =  ${GENGETOPT_FILES} ${GENGETOPT_CMDL}
  57
  58 # remove all generated man pages
  59 maintainer-clean-local:
  60         rm -rf $(GENGETOPT_CMDL)
  61
  62
  63 RNAfold.c:    RNAfold_cmdl.h
  64
  65 RNAfold_cmdl.h  RNAfold_cmdl.c: RNAfold.ggo
  66         gengetopt -i RNAfold.ggo
  67
  68 RNAfold_SOURCES=RNAfold_cmdl.c RNAfold.c
  69
  70 RNAsubopt.c:    RNAsubopt_cmdl.h
  71
  72 RNAsubopt_cmdl.h  RNAsubopt_cmdl.c: RNAsubopt.ggo
  73         gengetopt -i RNAsubopt.ggo
  74
  75 RNAsubopt_SOURCES=RNAsubopt_cmdl.c RNAsubopt.c
  76
  77
  78 RNAalifold.c:    RNAalifold_cmdl.h
  79
  80 RNAalifold_cmdl.h  RNAalifold_cmdl.c: RNAalifold.ggo
  81         gengetopt -i RNAalifold.ggo
  82
  83 RNAalifold_SOURCES=RNAalifold_cmdl.c RNAalifold.c
  84
  85
  86 RNAcofold.c:    RNAcofold_cmdl.h
  87
  88 RNAcofold_cmdl.h  RNAcofold_cmdl.c: RNAcofold.ggo
  89         gengetopt -i RNAcofold.ggo
  90
  91 RNAcofold_SOURCES=RNAcofold_cmdl.c RNAcofold.c
  92
  93 RNAup.c:        RNAup_cmdl.h
  94
  95 RNAup_cmdl.h  RNAup_cmdl.c: RNAup.ggo
  96         gengetopt -i RNAup.ggo
  97
  98 RNAup_SOURCES=RNAup_cmdl.c RNAup.c
  99
 100
 101 RNALfold.c:       RNALfold_cmdl.h
 102
 103 RNALfold_cmdl.h  RNALfold_cmdl.c: RNALfold.ggo
 104         gengetopt -i RNALfold.ggo
 105
 106 RNALfold_SOURCES=RNALfold_cmdl.c RNALfold.c
 107
 108 RNALalifold.c:      RNALalifold_cmdl.h
 109
 110 RNALalifold_cmdl.h  RNALalifold_cmdl.c: RNALalifold.ggo
 111         gengetopt -i RNALalifold.ggo
 112
 113 RNALalifold_SOURCES=RNALalifold_cmdl.c RNALalifold.c
 114
 115
 116 RNAplfold.c:      RNAplfold_cmdl.h
 117
 118 RNAplfold_cmdl.h  RNAplfold_cmdl.c: RNAplfold.ggo
 119         gengetopt -i RNAplfold.ggo
 120
 121 RNAplfold_SOURCES=RNAplfold_cmdl.c RNAplfold.c
 122
 123
 124 RNAduplex.c:      RNAduplex_cmdl.h
 125
 126 RNAduplex_cmdl.h  RNAduplex_cmdl.c: RNAduplex.ggo
 127         gengetopt -i RNAduplex.ggo
 128
 129 RNAduplex_SOURCES=RNAduplex_cmdl.c RNAduplex.c
 130
 131
 132 RNAaliduplex.c:   RNAaliduplex_cmdl.h
 133
 134 RNAaliduplex_cmdl.h  RNAaliduplex_cmdl.c: RNAaliduplex.ggo
 135         gengetopt -i RNAaliduplex.ggo
 136
 137 RNAaliduplex_SOURCES=RNAaliduplex_cmdl.c RNAaliduplex.c
 138
 139 RNAeval.c:   RNAeval_cmdl.h
 140
 141 RNAeval_cmdl.h  RNAeval_cmdl.c: RNAeval.ggo
 142         gengetopt -i RNAeval.ggo
 143
 144 RNAeval_SOURCES=RNAeval_cmdl.c RNAeval.c
 145
 146 RNAheat.c:   RNAheat_cmdl.h
 147
 148 RNAheat_cmdl.h  RNAheat_cmdl.c: RNAheat.ggo
 149         gengetopt -i RNAheat.ggo
 150
 151 RNAheat_SOURCES=RNAheat_cmdl.c RNAheat.c
 152
 153 RNA2Dfold.c:    RNA2Dfold_cmdl.h
 154
 155 RNA2Dfold_cmdl.h  RNA2Dfold_cmdl.c: RNA2Dfold.ggo
 156         gengetopt -i RNA2Dfold.ggo
 157
 158 RNA2Dfold_SOURCES=RNA2Dfold_cmdl.c RNA2Dfold.c
 159
 160 RNAparconv.c:    RNAparconv_cmdl.h
 161
 162 RNAparconv_cmdl.h  RNAparconv_cmdl.c: RNAparconv.ggo
 163         gengetopt -i RNAparconv.ggo
 164
 165 RNAparconv_SOURCES=RNAparconv_cmdl.c RNAparconv.c
 166
 167 RNAinverse.c:   RNAinverse_cmdl.h
 168
 169 RNAinverse_cmdl.h  RNAinverse_cmdl.c: RNAinverse.ggo
 170         gengetopt -i RNAinverse.ggo
 171
 172 RNAinverse_SOURCES=RNAinverse_cmdl.c RNAinverse.c
 173
 174 RNApaln.c:   RNApaln_cmdl.h
 175
 176 RNApaln_cmdl.h  RNApaln_cmdl.c: RNApaln.ggo
 177         gengetopt -i RNApaln.ggo
 178
 179 RNApaln_SOURCES=RNApaln_cmdl.c RNApaln.c
 180
 181 RNAplot.c:   RNAplot_cmdl.h
 182
 183 RNAplot_cmdl.h  RNAplot_cmdl.c: RNAplot.ggo
 184         gengetopt -i RNAplot.ggo
 185
 186 RNAplot_SOURCES=RNAplot_cmdl.c RNAplot.c
 187
 188 RNAPKplex.c:    RNAPKplex_cmdl.h
 189
 190 RNAPKplex_cmdl.h  RNAPKplex_cmdl.c: RNAPKplex.ggo
 191         gengetopt -i RNAPKplex.ggo
 192
 193 RNAPKplex_SOURCES=RNAPKplex_cmdl.c RNAPKplex.c
 194
 195 RNAplex.c:    RNAplex_cmdl.h
 196
 197 RNAplex_cmdl.h  RNAplex_cmdl.c: RNAplex.ggo
 198         gengetopt -i RNAplex.ggo
 199
 200 RNAplex_SOURCES=RNAplex_cmdl.c RNAplex.c
 201
 202 RNAsnoop.c:    RNAsnoop_cmdl.h
 203
 204 RNAsnoop_cmdl.h  RNAsnoop_cmdl.c: RNAsnoop.ggo
 205         gengetopt -i RNAsnoop.ggo
 206
 207 RNAsnoop_SOURCES=RNAsnoop_cmdl.c RNAsnoop.c
 208
 209 RNAdistance.c:    RNAdistance_cmdl.h
 210
 211 RNAdistance_cmdl.h  RNAdistance_cmdl.c: RNAdistance.ggo
 212         gengetopt -i RNAdistance.ggo
 213
 214 RNAdistance_SOURCES=RNAdistance_cmdl.c RNAdistance.c
 215
 216 RNApdist.c:    RNApdist_cmdl.h
 217
 218 RNApdist_cmdl.h  RNApdist_cmdl.c: RNApdist.ggo
 219         gengetopt -i RNApdist.ggo
 220
 221 RNApdist_SOURCES=RNApdist_cmdl.c RNApdist.c