binaries/src/ViennaRNA/Progs/Makefile.in

   1 # Makefile.in generated by automake 1.11.6 from Makefile.am.
   2 # @configure_input@
   3
   4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
   5 # 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
   6 # Foundation, Inc.
   7 # This Makefile.in is free software; the Free Software Foundation
   8 # gives unlimited permission to copy and/or distribute it,
   9 # with or without modifications, as long as this notice is preserved.
  10
  11 # This program is distributed in the hope that it will be useful,
  12 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
  13 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
  14 # PARTICULAR PURPOSE.
  15
  16 @SET_MAKE@
  17
  18 VPATH = @srcdir@
  19 am__make_dryrun = \
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  24         echo 'am--echo: ; @echo "AM"  OK' | $(MAKE) -f - 2>/dev/null \
  25           | grep '^AM OK$$' >/dev/null || am__dry=yes;; \
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  33     esac; \
  34     test $$am__dry = yes; \
  35   }
  36 pkgdatadir = $(datadir)/@PACKAGE@
  37 pkgincludedir = $(includedir)/@PACKAGE@
  38 pkglibdir = $(libdir)/@PACKAGE@
  39 pkglibexecdir = $(libexecdir)/@PACKAGE@
  40 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
  41 install_sh_DATA = $(install_sh) -c -m 644
  42 install_sh_PROGRAM = $(install_sh) -c
  43 install_sh_SCRIPT = $(install_sh) -c
  44 INSTALL_HEADER = $(INSTALL_DATA)
  45 transform = $(program_transform_name)
  46 NORMAL_INSTALL = :
  47 PRE_INSTALL = :
  48 POST_INSTALL = :
  49 NORMAL_UNINSTALL = :
  50 PRE_UNINSTALL = :
  51 POST_UNINSTALL = :
  52 build_triplet = @build@
  53 host_triplet = @host@
  54 bin_PROGRAMS = RNAfold$(EXEEXT) RNAeval$(EXEEXT) RNAheat$(EXEEXT) \
  55         RNApdist$(EXEEXT) RNAdistance$(EXEEXT) RNAinverse$(EXEEXT) \
  56         RNAplot$(EXEEXT) RNAsubopt$(EXEEXT) RNALfold$(EXEEXT) \
  57         RNAcofold$(EXEEXT) RNApaln$(EXEEXT) RNAduplex$(EXEEXT) \
  58         RNAalifold$(EXEEXT) RNAplfold$(EXEEXT) RNAup$(EXEEXT) \
  59         RNAaliduplex$(EXEEXT) RNALalifold$(EXEEXT) RNA2Dfold$(EXEEXT) \
  60         RNAparconv$(EXEEXT) RNAPKplex$(EXEEXT) RNAplex$(EXEEXT) \
  61         RNAsnoop$(EXEEXT)
  62 subdir = Progs
  63 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
  64 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
  65 am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
  66         $(top_srcdir)/m4/package.m4 $(top_srcdir)/configure.ac
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  68         $(ACLOCAL_M4)
  69 mkinstalldirs = $(install_sh) -d
  70 CONFIG_HEADER = $(top_builddir)/config.h
  71 CONFIG_CLEAN_FILES =
  72 CONFIG_CLEAN_VPATH_FILES =
  73 am__installdirs = "$(DESTDIR)$(bindir)"
  74 PROGRAMS = $(bin_PROGRAMS)
  75 am_RNA2Dfold_OBJECTS = RNA2Dfold_cmdl.$(OBJEXT) RNA2Dfold.$(OBJEXT)
  76 RNA2Dfold_OBJECTS = $(am_RNA2Dfold_OBJECTS)
  77 RNA2Dfold_LDADD = $(LDADD)
  78 am__DEPENDENCIES_1 =
  79 RNA2Dfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
  80 am_RNALalifold_OBJECTS = RNALalifold_cmdl.$(OBJEXT) \
  81         RNALalifold.$(OBJEXT)
  82 RNALalifold_OBJECTS = $(am_RNALalifold_OBJECTS)
  83 RNALalifold_LDADD = $(LDADD)
  84 RNALalifold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
  85 am_RNALfold_OBJECTS = RNALfold_cmdl.$(OBJEXT) RNALfold.$(OBJEXT)
  86 RNALfold_OBJECTS = $(am_RNALfold_OBJECTS)
  87 RNALfold_LDADD = $(LDADD)
  88 RNALfold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
  89 am_RNAPKplex_OBJECTS = RNAPKplex_cmdl.$(OBJEXT) RNAPKplex.$(OBJEXT)
  90 RNAPKplex_OBJECTS = $(am_RNAPKplex_OBJECTS)
  91 RNAPKplex_LDADD = $(LDADD)
  92 RNAPKplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
  93 am_RNAaliduplex_OBJECTS = RNAaliduplex_cmdl.$(OBJEXT) \
  94         RNAaliduplex.$(OBJEXT)
  95 RNAaliduplex_OBJECTS = $(am_RNAaliduplex_OBJECTS)
  96 RNAaliduplex_LDADD = $(LDADD)
  97 RNAaliduplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
  98 am_RNAalifold_OBJECTS = RNAalifold_cmdl.$(OBJEXT) RNAalifold.$(OBJEXT)
  99 RNAalifold_OBJECTS = $(am_RNAalifold_OBJECTS)
 100 RNAalifold_LDADD = $(LDADD)
 101 RNAalifold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 102 am_RNAcofold_OBJECTS = RNAcofold_cmdl.$(OBJEXT) RNAcofold.$(OBJEXT)
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 105 RNAcofold_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 106 am_RNAdistance_OBJECTS = RNAdistance_cmdl.$(OBJEXT) \
 107         RNAdistance.$(OBJEXT)
 108 RNAdistance_OBJECTS = $(am_RNAdistance_OBJECTS)
 109 RNAdistance_LDADD = $(LDADD)
 110 RNAdistance_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 111 am_RNAduplex_OBJECTS = RNAduplex_cmdl.$(OBJEXT) RNAduplex.$(OBJEXT)
 112 RNAduplex_OBJECTS = $(am_RNAduplex_OBJECTS)
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 114 RNAduplex_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 115 am_RNAeval_OBJECTS = RNAeval_cmdl.$(OBJEXT) RNAeval.$(OBJEXT)
 116 RNAeval_OBJECTS = $(am_RNAeval_OBJECTS)
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 119 am_RNAfold_OBJECTS = RNAfold_cmdl.$(OBJEXT) RNAfold.$(OBJEXT)
 120 RNAfold_OBJECTS = $(am_RNAfold_OBJECTS)
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 134 RNApaln_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 135 am_RNAparconv_OBJECTS = RNAparconv_cmdl.$(OBJEXT) RNAparconv.$(OBJEXT)
 136 RNAparconv_OBJECTS = $(am_RNAparconv_OBJECTS)
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 138 RNAparconv_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 139 am_RNApdist_OBJECTS = RNApdist_cmdl.$(OBJEXT) RNApdist.$(OBJEXT)
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 147 am_RNAplfold_OBJECTS = RNAplfold_cmdl.$(OBJEXT) RNAplfold.$(OBJEXT)
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 152 RNAplot_OBJECTS = $(am_RNAplot_OBJECTS)
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 156 RNAsnoop_OBJECTS = $(am_RNAsnoop_OBJECTS)
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 160 RNAsubopt_OBJECTS = $(am_RNAsubopt_OBJECTS)
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 162 RNAsubopt_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
 163 am_RNAup_OBJECTS = RNAup_cmdl.$(OBJEXT) RNAup.$(OBJEXT)
 164 RNAup_OBJECTS = $(am_RNAup_OBJECTS)
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 166 RNAup_DEPENDENCIES = $(am__DEPENDENCIES_1) ../lib/libRNA.a
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 168 depcomp = $(SHELL) $(top_srcdir)/config/depcomp
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 170 am__mv = mv -f
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 172         $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
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 175 am__v_CC_0 = @echo "  CC    " $@;
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 177 am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
 178 am__v_at_0 = @
 179 CCLD = $(CC)
 180 LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
 181 AM_V_CCLD = $(am__v_CCLD_@AM_V@)
 182 am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@)
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 185 am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@)
 186 am__v_GEN_0 = @echo "  GEN   " $@;
 187 SOURCES = $(RNA2Dfold_SOURCES) $(RNALalifold_SOURCES) \
 188         $(RNALfold_SOURCES) $(RNAPKplex_SOURCES) \
 189         $(RNAaliduplex_SOURCES) $(RNAalifold_SOURCES) \
 190         $(RNAcofold_SOURCES) $(RNAdistance_SOURCES) \
 191         $(RNAduplex_SOURCES) $(RNAeval_SOURCES) $(RNAfold_SOURCES) \
 192         $(RNAheat_SOURCES) $(RNAinverse_SOURCES) $(RNApaln_SOURCES) \
 193         $(RNAparconv_SOURCES) $(RNApdist_SOURCES) $(RNAplex_SOURCES) \
 194         $(RNAplfold_SOURCES) $(RNAplot_SOURCES) $(RNAsnoop_SOURCES) \
 195         $(RNAsubopt_SOURCES) $(RNAup_SOURCES)
 196 DIST_SOURCES = $(RNA2Dfold_SOURCES) $(RNALalifold_SOURCES) \
 197         $(RNALfold_SOURCES) $(RNAPKplex_SOURCES) \
 198         $(RNAaliduplex_SOURCES) $(RNAalifold_SOURCES) \
 199         $(RNAcofold_SOURCES) $(RNAdistance_SOURCES) \
 200         $(RNAduplex_SOURCES) $(RNAeval_SOURCES) $(RNAfold_SOURCES) \
 201         $(RNAheat_SOURCES) $(RNAinverse_SOURCES) $(RNApaln_SOURCES) \
 202         $(RNAparconv_SOURCES) $(RNApdist_SOURCES) $(RNAplex_SOURCES) \
 203         $(RNAplfold_SOURCES) $(RNAplot_SOURCES) $(RNAsnoop_SOURCES) \
 204         $(RNAsubopt_SOURCES) $(RNAup_SOURCES)
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 211 CTAGS = ctags
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 344 top_builddir = @top_builddir@
 345 top_srcdir = @top_srcdir@
 346 @WITH_LIBSVM_FALSE@RNALfold_LINK = ${CCLD} \
 347 @WITH_LIBSVM_FALSE@                  $(AM_CFLAGS) $(CFLAGS) \
 348 @WITH_LIBSVM_FALSE@                  $(AM_LDFLAGS) $(LDFLAGS) -o $@
 349
 350 @WITH_LIBSVM_TRUE@RNALfold_LINK = ${CXXLD} \
 351 @WITH_LIBSVM_TRUE@                  $(AM_CXXFLAGS) $(CXXFLAGS) \
 352 @WITH_LIBSVM_TRUE@                  $(AM_LDFLAGS) $(LDFLAGS) -o $@
 353
 354 LDADD = $(OPENMP_CFLAGS) ../lib/libRNA.a -lm
 355 AM_CFLAGS = $(OPENMP_CFLAGS)
 356 AM_CPPFLAGS = -I$(srcdir)/../H -I$(srcdir)/../lib
 357 GENGETOPT_CMDL = RNAfold_cmdl.c RNAfold_cmdl.h\
 358               RNAalifold_cmdl.c RNAalifold_cmdl.h\
 359               RNAcofold_cmdl.c  RNAcofold_cmdl.h\
 360               RNAup_cmdl.c  RNAup_cmdl.h\
 361               RNALfold_cmdl.c RNALfold_cmdl.h\
 362               RNALalifold_cmdl.c RNALalifold_cmdl.h\
 363               RNAplfold_cmdl.c RNAplfold_cmdl.h\
 364               RNAduplex_cmdl.c RNAduplex_cmdl.h\
 365               RNAaliduplex_cmdl.c RNAaliduplex_cmdl.h\
 366               RNAeval_cmdl.c RNAeval_cmdl.h\
 367               RNAheat_cmdl.c RNAheat_cmdl.h\
 368               RNAsubopt_cmdl.c RNAsubopt_cmdl.h\
 369               RNA2Dfold_cmdl.c RNA2Dfold_cmdl.h\
 370               RNAparconv_cmdl.c RNAparconv_cmdl.h\
 371               RNAinverse_cmdl.c RNAinverse_cmdl.h\
 372               RNApaln_cmdl.c RNApaln_cmdl.h\
 373               RNAplot_cmdl.c RNAplot_cmdl.h\
 374               RNAPKplex_cmdl.c RNAPKplex_cmdl.h\
 375               RNAplex_cmdl.c RNAplex_cmdl.h\
 376               RNAsnoop_cmdl.c RNAsnoop_cmdl.h\
 377               RNAdistance_cmdl.c RNAdistance_cmdl.h\
 378               RNApdist_cmdl.c RNApdist_cmdl.h
 379
 380 GENGETOPT_FILES = RNAfold.ggo RNAalifold.ggo RNAcofold.ggo\
 381               RNAup.ggo RNALfold.ggo RNALalifold.ggo\
 382               RNAplfold.ggo RNAduplex.ggo RNAaliduplex.ggo\
 383               RNAeval.ggo RNAheat.ggo RNAsubopt.ggo RNA2Dfold.ggo\
 384               RNAparconv.ggo RNAinverse.ggo RNApaln.ggo RNAplot.ggo\
 385               RNAPKplex.ggo RNAplex.ggo RNAsnoop.ggo RNAdistance.ggo\
 386               RNApdist.ggo
 387
 388 EXTRA_DIST = ${GENGETOPT_FILES} ${GENGETOPT_CMDL}
 389 RNAfold_SOURCES = RNAfold_cmdl.c RNAfold.c
 390 RNAsubopt_SOURCES = RNAsubopt_cmdl.c RNAsubopt.c
 391 RNAalifold_SOURCES = RNAalifold_cmdl.c RNAalifold.c
 392 RNAcofold_SOURCES = RNAcofold_cmdl.c RNAcofold.c
 393 RNAup_SOURCES = RNAup_cmdl.c RNAup.c
 394 RNALfold_SOURCES = RNALfold_cmdl.c RNALfold.c
 395 RNALalifold_SOURCES = RNALalifold_cmdl.c RNALalifold.c
 396 RNAplfold_SOURCES = RNAplfold_cmdl.c RNAplfold.c
 397 RNAduplex_SOURCES = RNAduplex_cmdl.c RNAduplex.c
 398 RNAaliduplex_SOURCES = RNAaliduplex_cmdl.c RNAaliduplex.c
 399 RNAeval_SOURCES = RNAeval_cmdl.c RNAeval.c
 400 RNAheat_SOURCES = RNAheat_cmdl.c RNAheat.c
 401 RNA2Dfold_SOURCES = RNA2Dfold_cmdl.c RNA2Dfold.c
 402 RNAparconv_SOURCES = RNAparconv_cmdl.c RNAparconv.c
 403 RNAinverse_SOURCES = RNAinverse_cmdl.c RNAinverse.c
 404 RNApaln_SOURCES = RNApaln_cmdl.c RNApaln.c
 405 RNAplot_SOURCES = RNAplot_cmdl.c RNAplot.c
 406 RNAPKplex_SOURCES = RNAPKplex_cmdl.c RNAPKplex.c
 407 RNAplex_SOURCES = RNAplex_cmdl.c RNAplex.c
 408 RNAsnoop_SOURCES = RNAsnoop_cmdl.c RNAsnoop.c
 409 RNAdistance_SOURCES = RNAdistance_cmdl.c RNAdistance.c
 410 RNApdist_SOURCES = RNApdist_cmdl.c RNApdist.c
 411 all: all-am
 412
 413 .SUFFIXES:
 414 .SUFFIXES: .c .o .obj
 415 $(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
 416         @for dep in $?; do \
 417           case '$(am__configure_deps)' in \
 418             *$$dep*) \
 419               ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
 420                 && { if test -f $@; then exit 0; else break; fi; }; \
 421               exit 1;; \
 422           esac; \
 423         done; \
 424         echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu Progs/Makefile'; \
 425         $(am__cd) $(top_srcdir) && \
 426           $(AUTOMAKE) --gnu Progs/Makefile
 427 .PRECIOUS: Makefile
 428 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
 429         @case '$?' in \
 430           *config.status*) \
 431             cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
 432           *) \
 433             echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
 434             cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
 435         esac;
 436
 437 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
 438         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 439
 440 $(top_srcdir)/configure:  $(am__configure_deps)
 441         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 442 $(ACLOCAL_M4):  $(am__aclocal_m4_deps)
 443         cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
 444 $(am__aclocal_m4_deps):
 445 install-binPROGRAMS: $(bin_PROGRAMS)
 446         @$(NORMAL_INSTALL)
 447         @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
 448         if test -n "$$list"; then \
 449           echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
 450           $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
 451         fi; \
 452         for p in $$list; do echo "$$p $$p"; done | \
 453         sed 's/$(EXEEXT)$$//' | \
 454         while read p p1; do if test -f $$p; \
 455           then echo "$$p"; echo "$$p"; else :; fi; \
 456         done | \
 457         sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
 458             -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
 459         sed 'N;N;N;s,\n, ,g' | \
 460         $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
 461           { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
 462             if ($$2 == $$4) files[d] = files[d] " " $$1; \
 463             else { print "f", $$3 "/" $$4, $$1; } } \
 464           END { for (d in files) print "f", d, files[d] }' | \
 465         while read type dir files; do \
 466             if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
 467             test -z "$$files" || { \
 468               echo " $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
 469               $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
 470             } \
 471         ; done
 472
 473 uninstall-binPROGRAMS:
 474         @$(NORMAL_UNINSTALL)
 475         @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
 476         files=`for p in $$list; do echo "$$p"; done | \
 477           sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
 478               -e 's/$$/$(EXEEXT)/' `; \
 479         test -n "$$list" || exit 0; \
 480         echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
 481         cd "$(DESTDIR)$(bindir)" && rm -f $$files
 482
 483 clean-binPROGRAMS:
 484         -test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
 485 RNA2Dfold$(EXEEXT): $(RNA2Dfold_OBJECTS) $(RNA2Dfold_DEPENDENCIES) $(EXTRA_RNA2Dfold_DEPENDENCIES)
 486         @rm -f RNA2Dfold$(EXEEXT)
 487         $(AM_V_CCLD)$(LINK) $(RNA2Dfold_OBJECTS) $(RNA2Dfold_LDADD) $(LIBS)
 488 RNALalifold$(EXEEXT): $(RNALalifold_OBJECTS) $(RNALalifold_DEPENDENCIES) $(EXTRA_RNALalifold_DEPENDENCIES)
 489         @rm -f RNALalifold$(EXEEXT)
 490         $(AM_V_CCLD)$(LINK) $(RNALalifold_OBJECTS) $(RNALalifold_LDADD) $(LIBS)
 491 RNALfold$(EXEEXT): $(RNALfold_OBJECTS) $(RNALfold_DEPENDENCIES) $(EXTRA_RNALfold_DEPENDENCIES)
 492         @rm -f RNALfold$(EXEEXT)
 493         $(AM_V_GEN)$(RNALfold_LINK) $(RNALfold_OBJECTS) $(RNALfold_LDADD) $(LIBS)
 494 RNAPKplex$(EXEEXT): $(RNAPKplex_OBJECTS) $(RNAPKplex_DEPENDENCIES) $(EXTRA_RNAPKplex_DEPENDENCIES)
 495         @rm -f RNAPKplex$(EXEEXT)
 496         $(AM_V_CCLD)$(LINK) $(RNAPKplex_OBJECTS) $(RNAPKplex_LDADD) $(LIBS)
 497 RNAaliduplex$(EXEEXT): $(RNAaliduplex_OBJECTS) $(RNAaliduplex_DEPENDENCIES) $(EXTRA_RNAaliduplex_DEPENDENCIES)
 498         @rm -f RNAaliduplex$(EXEEXT)
 499         $(AM_V_CCLD)$(LINK) $(RNAaliduplex_OBJECTS) $(RNAaliduplex_LDADD) $(LIBS)
 500 RNAalifold$(EXEEXT): $(RNAalifold_OBJECTS) $(RNAalifold_DEPENDENCIES) $(EXTRA_RNAalifold_DEPENDENCIES)
 501         @rm -f RNAalifold$(EXEEXT)
 502         $(AM_V_CCLD)$(LINK) $(RNAalifold_OBJECTS) $(RNAalifold_LDADD) $(LIBS)
 503 RNAcofold$(EXEEXT): $(RNAcofold_OBJECTS) $(RNAcofold_DEPENDENCIES) $(EXTRA_RNAcofold_DEPENDENCIES)
 504         @rm -f RNAcofold$(EXEEXT)
 505         $(AM_V_CCLD)$(LINK) $(RNAcofold_OBJECTS) $(RNAcofold_LDADD) $(LIBS)
 506 RNAdistance$(EXEEXT): $(RNAdistance_OBJECTS) $(RNAdistance_DEPENDENCIES) $(EXTRA_RNAdistance_DEPENDENCIES)
 507         @rm -f RNAdistance$(EXEEXT)
 508         $(AM_V_CCLD)$(LINK) $(RNAdistance_OBJECTS) $(RNAdistance_LDADD) $(LIBS)
 509 RNAduplex$(EXEEXT): $(RNAduplex_OBJECTS) $(RNAduplex_DEPENDENCIES) $(EXTRA_RNAduplex_DEPENDENCIES)
 510         @rm -f RNAduplex$(EXEEXT)
 511         $(AM_V_CCLD)$(LINK) $(RNAduplex_OBJECTS) $(RNAduplex_LDADD) $(LIBS)
 512 RNAeval$(EXEEXT): $(RNAeval_OBJECTS) $(RNAeval_DEPENDENCIES) $(EXTRA_RNAeval_DEPENDENCIES)
 513         @rm -f RNAeval$(EXEEXT)
 514         $(AM_V_CCLD)$(LINK) $(RNAeval_OBJECTS) $(RNAeval_LDADD) $(LIBS)
 515 RNAfold$(EXEEXT): $(RNAfold_OBJECTS) $(RNAfold_DEPENDENCIES) $(EXTRA_RNAfold_DEPENDENCIES)
 516         @rm -f RNAfold$(EXEEXT)
 517         $(AM_V_CCLD)$(LINK) $(RNAfold_OBJECTS) $(RNAfold_LDADD) $(LIBS)
 518 RNAheat$(EXEEXT): $(RNAheat_OBJECTS) $(RNAheat_DEPENDENCIES) $(EXTRA_RNAheat_DEPENDENCIES)
 519         @rm -f RNAheat$(EXEEXT)
 520         $(AM_V_CCLD)$(LINK) $(RNAheat_OBJECTS) $(RNAheat_LDADD) $(LIBS)
 521 RNAinverse$(EXEEXT): $(RNAinverse_OBJECTS) $(RNAinverse_DEPENDENCIES) $(EXTRA_RNAinverse_DEPENDENCIES)
 522         @rm -f RNAinverse$(EXEEXT)
 523         $(AM_V_CCLD)$(LINK) $(RNAinverse_OBJECTS) $(RNAinverse_LDADD) $(LIBS)
 524 RNApaln$(EXEEXT): $(RNApaln_OBJECTS) $(RNApaln_DEPENDENCIES) $(EXTRA_RNApaln_DEPENDENCIES)
 525         @rm -f RNApaln$(EXEEXT)
 526         $(AM_V_CCLD)$(LINK) $(RNApaln_OBJECTS) $(RNApaln_LDADD) $(LIBS)
 527 RNAparconv$(EXEEXT): $(RNAparconv_OBJECTS) $(RNAparconv_DEPENDENCIES) $(EXTRA_RNAparconv_DEPENDENCIES)
 528         @rm -f RNAparconv$(EXEEXT)
 529         $(AM_V_CCLD)$(LINK) $(RNAparconv_OBJECTS) $(RNAparconv_LDADD) $(LIBS)
 530 RNApdist$(EXEEXT): $(RNApdist_OBJECTS) $(RNApdist_DEPENDENCIES) $(EXTRA_RNApdist_DEPENDENCIES)
 531         @rm -f RNApdist$(EXEEXT)
 532         $(AM_V_CCLD)$(LINK) $(RNApdist_OBJECTS) $(RNApdist_LDADD) $(LIBS)
 533 RNAplex$(EXEEXT): $(RNAplex_OBJECTS) $(RNAplex_DEPENDENCIES) $(EXTRA_RNAplex_DEPENDENCIES)
 534         @rm -f RNAplex$(EXEEXT)
 535         $(AM_V_CCLD)$(LINK) $(RNAplex_OBJECTS) $(RNAplex_LDADD) $(LIBS)
 536 RNAplfold$(EXEEXT): $(RNAplfold_OBJECTS) $(RNAplfold_DEPENDENCIES) $(EXTRA_RNAplfold_DEPENDENCIES)
 537         @rm -f RNAplfold$(EXEEXT)
 538         $(AM_V_CCLD)$(LINK) $(RNAplfold_OBJECTS) $(RNAplfold_LDADD) $(LIBS)
 539 RNAplot$(EXEEXT): $(RNAplot_OBJECTS) $(RNAplot_DEPENDENCIES) $(EXTRA_RNAplot_DEPENDENCIES)
 540         @rm -f RNAplot$(EXEEXT)
 541         $(AM_V_CCLD)$(LINK) $(RNAplot_OBJECTS) $(RNAplot_LDADD) $(LIBS)
 542 RNAsnoop$(EXEEXT): $(RNAsnoop_OBJECTS) $(RNAsnoop_DEPENDENCIES) $(EXTRA_RNAsnoop_DEPENDENCIES)
 543         @rm -f RNAsnoop$(EXEEXT)
 544         $(AM_V_CCLD)$(LINK) $(RNAsnoop_OBJECTS) $(RNAsnoop_LDADD) $(LIBS)
 545 RNAsubopt$(EXEEXT): $(RNAsubopt_OBJECTS) $(RNAsubopt_DEPENDENCIES) $(EXTRA_RNAsubopt_DEPENDENCIES)
 546         @rm -f RNAsubopt$(EXEEXT)
 547         $(AM_V_CCLD)$(LINK) $(RNAsubopt_OBJECTS) $(RNAsubopt_LDADD) $(LIBS)
 548 RNAup$(EXEEXT): $(RNAup_OBJECTS) $(RNAup_DEPENDENCIES) $(EXTRA_RNAup_DEPENDENCIES)
 549         @rm -f RNAup$(EXEEXT)
 550         $(AM_V_CCLD)$(LINK) $(RNAup_OBJECTS) $(RNAup_LDADD) $(LIBS)
 551
 552 mostlyclean-compile:
 553         -rm -f *.$(OBJEXT)
 554
 555 distclean-compile:
 556         -rm -f *.tab.c
 557
 558 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNA2Dfold.Po@am__quote@
 559 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNA2Dfold_cmdl.Po@am__quote@
 560 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNALalifold.Po@am__quote@
 561 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNALalifold_cmdl.Po@am__quote@
 562 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNALfold.Po@am__quote@
 563 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNALfold_cmdl.Po@am__quote@
 564 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAPKplex.Po@am__quote@
 565 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAPKplex_cmdl.Po@am__quote@
 566 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAaliduplex.Po@am__quote@
 567 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAaliduplex_cmdl.Po@am__quote@
 568 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAalifold.Po@am__quote@
 569 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAalifold_cmdl.Po@am__quote@
 570 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAcofold.Po@am__quote@
 571 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAcofold_cmdl.Po@am__quote@
 572 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAdistance.Po@am__quote@
 573 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAdistance_cmdl.Po@am__quote@
 574 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAduplex.Po@am__quote@
 575 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAduplex_cmdl.Po@am__quote@
 576 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAeval.Po@am__quote@
 577 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAeval_cmdl.Po@am__quote@
 578 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAfold.Po@am__quote@
 579 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAfold_cmdl.Po@am__quote@
 580 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAheat.Po@am__quote@
 581 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAheat_cmdl.Po@am__quote@
 582 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAinverse.Po@am__quote@
 583 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAinverse_cmdl.Po@am__quote@
 584 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNApaln.Po@am__quote@
 585 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNApaln_cmdl.Po@am__quote@
 586 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAparconv.Po@am__quote@
 587 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAparconv_cmdl.Po@am__quote@
 588 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNApdist.Po@am__quote@
 589 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNApdist_cmdl.Po@am__quote@
 590 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplex.Po@am__quote@
 591 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplex_cmdl.Po@am__quote@
 592 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplfold.Po@am__quote@
 593 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplfold_cmdl.Po@am__quote@
 594 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplot.Po@am__quote@
 595 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAplot_cmdl.Po@am__quote@
 596 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAsnoop.Po@am__quote@
 597 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAsnoop_cmdl.Po@am__quote@
 598 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAsubopt.Po@am__quote@
 599 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAsubopt_cmdl.Po@am__quote@
 600 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAup.Po@am__quote@
 601 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RNAup_cmdl.Po@am__quote@
 602
 603 .c.o:
 604 @am__fastdepCC_TRUE@    $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
 605 @am__fastdepCC_TRUE@    $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 606 @AMDEP_TRUE@@am__fastdepCC_FALSE@       $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 607 @AMDEP_TRUE@@am__fastdepCC_FALSE@       DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 608 @am__fastdepCC_FALSE@   $(AM_V_CC@am__nodep@)$(COMPILE) -c $<
 609
 610 .c.obj:
 611 @am__fastdepCC_TRUE@    $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
 612 @am__fastdepCC_TRUE@    $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
 613 @AMDEP_TRUE@@am__fastdepCC_FALSE@       $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
 614 @AMDEP_TRUE@@am__fastdepCC_FALSE@       DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 615 @am__fastdepCC_FALSE@   $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'`
 616
 617 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
 618         list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
 619         unique=`for i in $$list; do \
 620             if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 621           done | \
 622           $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 623               END { if (nonempty) { for (i in files) print i; }; }'`; \
 624         mkid -fID $$unique
 625 tags: TAGS
 626
 627 TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 628                 $(TAGS_FILES) $(LISP)
 629         set x; \
 630         here=`pwd`; \
 631         list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 632         unique=`for i in $$list; do \
 633             if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 634           done | \
 635           $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 636               END { if (nonempty) { for (i in files) print i; }; }'`; \
 637         shift; \
 638         if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
 639           test -n "$$unique" || unique=$$empty_fix; \
 640           if test $$# -gt 0; then \
 641             $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
 642               "$$@" $$unique; \
 643           else \
 644             $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
 645               $$unique; \
 646           fi; \
 647         fi
 648 ctags: CTAGS
 649 CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
 650                 $(TAGS_FILES) $(LISP)
 651         list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
 652         unique=`for i in $$list; do \
 653             if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
 654           done | \
 655           $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
 656               END { if (nonempty) { for (i in files) print i; }; }'`; \
 657         test -z "$(CTAGS_ARGS)$$unique" \
 658           || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
 659              $$unique
 660
 661 GTAGS:
 662         here=`$(am__cd) $(top_builddir) && pwd` \
 663           && $(am__cd) $(top_srcdir) \
 664           && gtags -i $(GTAGS_ARGS) "$$here"
 665
 666 distclean-tags:
 667         -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 668
 669 distdir: $(DISTFILES)
 670         @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 671         topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
 672         list='$(DISTFILES)'; \
 673           dist_files=`for file in $$list; do echo $$file; done | \
 674           sed -e "s|^$$srcdirstrip/||;t" \
 675               -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
 676         case $$dist_files in \
 677           */*) $(MKDIR_P) `echo "$$dist_files" | \
 678                            sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
 679                            sort -u` ;; \
 680         esac; \
 681         for file in $$dist_files; do \
 682           if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
 683           if test -d $$d/$$file; then \
 684             dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
 685             if test -d "$(distdir)/$$file"; then \
 686               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 687             fi; \
 688             if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
 689               cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
 690               find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
 691             fi; \
 692             cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
 693           else \
 694             test -f "$(distdir)/$$file" \
 695             || cp -p $$d/$$file "$(distdir)/$$file" \
 696             || exit 1; \
 697           fi; \
 698         done
 699 check-am: all-am
 700 check: check-am
 701 all-am: Makefile $(PROGRAMS)
 702 installdirs:
 703         for dir in "$(DESTDIR)$(bindir)"; do \
 704           test -z "$$dir" || $(MKDIR_P) "$$dir"; \
 705         done
 706 install: install-am
 707 install-exec: install-exec-am
 708 install-data: install-data-am
 709 uninstall: uninstall-am
 710
 711 install-am: all-am
 712         @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
 713
 714 installcheck: installcheck-am
 715 install-strip:
 716         if test -z '$(STRIP)'; then \
 717           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 718             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 719               install; \
 720         else \
 721           $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
 722             install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
 723             "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
 724         fi
 725 mostlyclean-generic:
 726
 727 clean-generic:
 728
 729 distclean-generic:
 730         -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
 731         -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
 732
 733 maintainer-clean-generic:
 734         @echo "This command is intended for maintainers to use"
 735         @echo "it deletes files that may require special tools to rebuild."
 736 clean: clean-am
 737
 738 clean-am: clean-binPROGRAMS clean-generic mostlyclean-am
 739
 740 distclean: distclean-am
 741         -rm -rf ./$(DEPDIR)
 742         -rm -f Makefile
 743 distclean-am: clean-am distclean-compile distclean-generic \
 744         distclean-tags
 745
 746 dvi: dvi-am
 747
 748 dvi-am:
 749
 750 html: html-am
 751
 752 html-am:
 753
 754 info: info-am
 755
 756 info-am:
 757
 758 install-data-am:
 759
 760 install-dvi: install-dvi-am
 761
 762 install-dvi-am:
 763
 764 install-exec-am: install-binPROGRAMS
 765
 766 install-html: install-html-am
 767
 768 install-html-am:
 769
 770 install-info: install-info-am
 771
 772 install-info-am:
 773
 774 install-man:
 775
 776 install-pdf: install-pdf-am
 777
 778 install-pdf-am:
 779
 780 install-ps: install-ps-am
 781
 782 install-ps-am:
 783
 784 installcheck-am:
 785
 786 maintainer-clean: maintainer-clean-am
 787         -rm -rf ./$(DEPDIR)
 788         -rm -f Makefile
 789 maintainer-clean-am: distclean-am maintainer-clean-generic \
 790         maintainer-clean-local
 791
 792 mostlyclean: mostlyclean-am
 793
 794 mostlyclean-am: mostlyclean-compile mostlyclean-generic
 795
 796 pdf: pdf-am
 797
 798 pdf-am:
 799
 800 ps: ps-am
 801
 802 ps-am:
 803
 804 uninstall-am: uninstall-binPROGRAMS
 805
 806 .MAKE: install-am install-strip
 807
 808 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
 809         clean-generic ctags distclean distclean-compile \
 810         distclean-generic distclean-tags distdir dvi dvi-am html \
 811         html-am info info-am install install-am install-binPROGRAMS \
 812         install-data install-data-am install-dvi install-dvi-am \
 813         install-exec install-exec-am install-html install-html-am \
 814         install-info install-info-am install-man install-pdf \
 815         install-pdf-am install-ps install-ps-am install-strip \
 816         installcheck installcheck-am installdirs maintainer-clean \
 817         maintainer-clean-generic maintainer-clean-local mostlyclean \
 818         mostlyclean-compile mostlyclean-generic pdf pdf-am ps ps-am \
 819         tags uninstall uninstall-am uninstall-binPROGRAMS
 820
 821
 822 # remove all generated man pages
 823 maintainer-clean-local:
 824         rm -rf $(GENGETOPT_CMDL)
 825
 826 RNAfold.c:    RNAfold_cmdl.h
 827
 828 RNAfold_cmdl.h  RNAfold_cmdl.c: RNAfold.ggo
 829         gengetopt -i RNAfold.ggo
 830
 831 RNAsubopt.c:    RNAsubopt_cmdl.h
 832
 833 RNAsubopt_cmdl.h  RNAsubopt_cmdl.c: RNAsubopt.ggo
 834         gengetopt -i RNAsubopt.ggo
 835
 836 RNAalifold.c:    RNAalifold_cmdl.h
 837
 838 RNAalifold_cmdl.h  RNAalifold_cmdl.c: RNAalifold.ggo
 839         gengetopt -i RNAalifold.ggo
 840
 841 RNAcofold.c:    RNAcofold_cmdl.h
 842
 843 RNAcofold_cmdl.h  RNAcofold_cmdl.c: RNAcofold.ggo
 844         gengetopt -i RNAcofold.ggo
 845
 846 RNAup.c:        RNAup_cmdl.h
 847
 848 RNAup_cmdl.h  RNAup_cmdl.c: RNAup.ggo
 849         gengetopt -i RNAup.ggo
 850
 851 RNALfold.c:       RNALfold_cmdl.h
 852
 853 RNALfold_cmdl.h  RNALfold_cmdl.c: RNALfold.ggo
 854         gengetopt -i RNALfold.ggo
 855
 856 RNALalifold.c:      RNALalifold_cmdl.h
 857
 858 RNALalifold_cmdl.h  RNALalifold_cmdl.c: RNALalifold.ggo
 859         gengetopt -i RNALalifold.ggo
 860
 861 RNAplfold.c:      RNAplfold_cmdl.h
 862
 863 RNAplfold_cmdl.h  RNAplfold_cmdl.c: RNAplfold.ggo
 864         gengetopt -i RNAplfold.ggo
 865
 866 RNAduplex.c:      RNAduplex_cmdl.h
 867
 868 RNAduplex_cmdl.h  RNAduplex_cmdl.c: RNAduplex.ggo
 869         gengetopt -i RNAduplex.ggo
 870
 871 RNAaliduplex.c:   RNAaliduplex_cmdl.h
 872
 873 RNAaliduplex_cmdl.h  RNAaliduplex_cmdl.c: RNAaliduplex.ggo
 874         gengetopt -i RNAaliduplex.ggo
 875
 876 RNAeval.c:   RNAeval_cmdl.h
 877
 878 RNAeval_cmdl.h  RNAeval_cmdl.c: RNAeval.ggo
 879         gengetopt -i RNAeval.ggo
 880
 881 RNAheat.c:   RNAheat_cmdl.h
 882
 883 RNAheat_cmdl.h  RNAheat_cmdl.c: RNAheat.ggo
 884         gengetopt -i RNAheat.ggo
 885
 886 RNA2Dfold.c:    RNA2Dfold_cmdl.h
 887
 888 RNA2Dfold_cmdl.h  RNA2Dfold_cmdl.c: RNA2Dfold.ggo
 889         gengetopt -i RNA2Dfold.ggo
 890
 891 RNAparconv.c:    RNAparconv_cmdl.h
 892
 893 RNAparconv_cmdl.h  RNAparconv_cmdl.c: RNAparconv.ggo
 894         gengetopt -i RNAparconv.ggo
 895
 896 RNAinverse.c:   RNAinverse_cmdl.h
 897
 898 RNAinverse_cmdl.h  RNAinverse_cmdl.c: RNAinverse.ggo
 899         gengetopt -i RNAinverse.ggo
 900
 901 RNApaln.c:   RNApaln_cmdl.h
 902
 903 RNApaln_cmdl.h  RNApaln_cmdl.c: RNApaln.ggo
 904         gengetopt -i RNApaln.ggo
 905
 906 RNAplot.c:   RNAplot_cmdl.h
 907
 908 RNAplot_cmdl.h  RNAplot_cmdl.c: RNAplot.ggo
 909         gengetopt -i RNAplot.ggo
 910
 911 RNAPKplex.c:    RNAPKplex_cmdl.h
 912
 913 RNAPKplex_cmdl.h  RNAPKplex_cmdl.c: RNAPKplex.ggo
 914         gengetopt -i RNAPKplex.ggo
 915
 916 RNAplex.c:    RNAplex_cmdl.h
 917
 918 RNAplex_cmdl.h  RNAplex_cmdl.c: RNAplex.ggo
 919         gengetopt -i RNAplex.ggo
 920
 921 RNAsnoop.c:    RNAsnoop_cmdl.h
 922
 923 RNAsnoop_cmdl.h  RNAsnoop_cmdl.c: RNAsnoop.ggo
 924         gengetopt -i RNAsnoop.ggo
 925
 926 RNAdistance.c:    RNAdistance_cmdl.h
 927
 928 RNAdistance_cmdl.h  RNAdistance_cmdl.c: RNAdistance.ggo
 929         gengetopt -i RNAdistance.ggo
 930
 931 RNApdist.c:    RNApdist_cmdl.h
 932
 933 RNApdist_cmdl.h  RNApdist_cmdl.c: RNApdist.ggo
 934         gengetopt -i RNApdist.ggo
 935
 936 # Tell versions [3.59,3.63) of GNU make to not export all variables.
 937 # Otherwise a system limit (for SysV at least) may be exceeded.
 938 .NOEXPORT: