binaries/src/ViennaRNA/Utils/Fold

   1 #!/bin/csh -f
   2 # This is an example script that demonstrates how to automatically convert
   3 # seqences from databanks into a format suitable for RNAfold and pipe the
   4 # result to RNAfold.
   5 @ n=$#argv
   6 if ( $n == 0 ) goto usage
   7 if !( -f $argv[$n] ) goto nofile
   8 readseq -f19 -pipe $argv[$n] | sed -e "/^>/\!s/[Tt]/U/g" | RNAfold $argv[1-$n]
   9 exit
  10 nofile:
  11 echo "couldn't open file " $argv[$n]
  12 usage:
  13 echo "usage: Fold [RNAfold_options] sequence_file"
  14 exit -1
  15