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[jabaws.git] / binaries / src / ViennaRNA / doc / html / structinteract.html
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66 <a href="#pub-attribs">Data Fields</a>  </div>
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68 <div class="title">interact Struct Reference</div>  </div>
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70 <div class="contents">
71 <table class="memberdecls">
72 <tr class="heading"><td colspan="2"><h2><a name="pub-attribs"></a>
73 Data Fields</h2></td></tr>
74 <tr class="memitem:a1fc8b3860c083f164daa9712690a3a56"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a1fc8b3860c083f164daa9712690a3a56"></a>
75 double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a1fc8b3860c083f164daa9712690a3a56">Pi</a></td></tr>
76 <tr class="memdesc:a1fc8b3860c083f164daa9712690a3a56"><td class="mdescLeft">&#160;</td><td class="mdescRight">probabilities of interaction <br/></td></tr>
77 <tr class="memitem:a54f8183542fff4c32ab7ace49a16c02c"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a54f8183542fff4c32ab7ace49a16c02c"></a>
78 double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a54f8183542fff4c32ab7ace49a16c02c">Gi</a></td></tr>
79 <tr class="memdesc:a54f8183542fff4c32ab7ace49a16c02c"><td class="mdescLeft">&#160;</td><td class="mdescRight">free energies of interaction <br/></td></tr>
80 <tr class="memitem:ad58303190f9e085c3ab59890cbf61223"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ad58303190f9e085c3ab59890cbf61223"></a>
81 double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ad58303190f9e085c3ab59890cbf61223">Gikjl</a></td></tr>
82 <tr class="memdesc:ad58303190f9e085c3ab59890cbf61223"><td class="mdescLeft">&#160;</td><td class="mdescRight">full free energy for interaction between [k,i] k&lt;i in longer seq and [j,l] j&lt;l in shorter seq <br/></td></tr>
83 <tr class="memitem:a41793812abae560805414761fec398fe"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a41793812abae560805414761fec398fe"></a>
84 double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a41793812abae560805414761fec398fe">Gikjl_wo</a></td></tr>
85 <tr class="memdesc:a41793812abae560805414761fec398fe"><td class="mdescLeft">&#160;</td><td class="mdescRight">Gikjl without contributions for prob_unpaired. <br/></td></tr>
86 <tr class="memitem:ab6d031a21388be8763b75ea74c937f17"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ab6d031a21388be8763b75ea74c937f17"></a>
87 int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ab6d031a21388be8763b75ea74c937f17">i</a></td></tr>
88 <tr class="memdesc:ab6d031a21388be8763b75ea74c937f17"><td class="mdescLeft">&#160;</td><td class="mdescRight">k&lt;i in longer seq <br/></td></tr>
89 <tr class="memitem:a61e457fbf943d57364be6ddf1b4e7b8a"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a61e457fbf943d57364be6ddf1b4e7b8a"></a>
90 int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a61e457fbf943d57364be6ddf1b4e7b8a">k</a></td></tr>
91 <tr class="memdesc:a61e457fbf943d57364be6ddf1b4e7b8a"><td class="mdescLeft">&#160;</td><td class="mdescRight">k&lt;i in longer seq <br/></td></tr>
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93 int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a7555cb6363d1479341eb72b9c087aa34">j</a></td></tr>
94 <tr class="memdesc:a7555cb6363d1479341eb72b9c087aa34"><td class="mdescLeft">&#160;</td><td class="mdescRight">j&lt;l in shorter seq <br/></td></tr>
95 <tr class="memitem:a030ab45056342e12cb3955e4defd3904"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a030ab45056342e12cb3955e4defd3904"></a>
96 int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#a030ab45056342e12cb3955e4defd3904">l</a></td></tr>
97 <tr class="memdesc:a030ab45056342e12cb3955e4defd3904"><td class="mdescLeft">&#160;</td><td class="mdescRight">j&lt;l in shorter seq <br/></td></tr>
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99 int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structinteract.html#ac9fcb5dca54ec5faa76e02b6488b9524">length</a></td></tr>
100 <tr class="memdesc:ac9fcb5dca54ec5faa76e02b6488b9524"><td class="mdescLeft">&#160;</td><td class="mdescRight">length of longer sequence <br/></td></tr>
101 </table>
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