binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex

   1 \hypertarget{LPfold_8h}{\section{L\-Pfold.\-h}
   2 \label{LPfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-L\-Pfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-L\-Pfold.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00005
  11 00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
  12 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
  14 00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
  15 00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
  16 00011 \textcolor{preprocessor}{}
  17 00029 \textcolor{keywordtype}{void} \hyperlink{group__local__pf__fold_ga5a019014d37fe6105131dfc2fc447880}{update\_pf\_paramsLP}(\textcolor{keywordtype}{int} length);
  18 00030
  19 00037 \textcolor{keywordtype}{void} update\_pf\_paramsLP\_par(\textcolor{keywordtype}{int} length, \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
  20 00038
  21 00076 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gaa1ecd401617ebc748a0220026543c777}{pfl\_fold}(\textcolor{keywordtype}{char} *sequence,
  22 00077                 \textcolor{keywordtype}{int} winSize,
  23 00078                 \textcolor{keywordtype}{int} pairSize,
  24 00079                 \textcolor{keywordtype}{float} cutoffb,
  25 00080                 \textcolor{keywordtype}{double} **pU,
  26 00081                 \textcolor{keyword}{struct} \hyperlink{structplist}{plist} **dpp2,
  27 00082                 FILE *pUfp,
  28 00083                 FILE *spup);
  29 00084
  30 00091 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{pfl\_fold\_par}(\textcolor{keywordtype}{char} *sequence,
  31 00092                     \textcolor{keywordtype}{int} winSize,
  32 00093                     \textcolor{keywordtype}{int} pairSize,
  33 00094                     \textcolor{keywordtype}{float} cutoffb,
  34 00095                     \textcolor{keywordtype}{double} **pU,
  35 00096                     \textcolor{keyword}{struct} \hyperlink{structplist}{plist} **dpp2,
  36 00097                     FILE *pUfp,
  37 00098                     FILE *spup,
  38 00099                     \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
  39 00100
  40 00101
  41 00102 \textcolor{keywordtype}{void} putoutpU\_prob\_par( \textcolor{keywordtype}{double} **pU,
  42 00103                         \textcolor{keywordtype}{int} length,
  43 00104                         \textcolor{keywordtype}{int} ulength,
  44 00105                         FILE *fp,
  45 00106                         \textcolor{keywordtype}{int} energies,
  46 00107                         \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
  47 00108
  48 00109
  49 00124 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga0bcb751860bbf34e3dfee8c2fbdb3ef3}{putoutpU\_prob}(\textcolor{keywordtype}{double} **pU,
  50 00125                       \textcolor{keywordtype}{int} length,
  51 00126                       \textcolor{keywordtype}{int} ulength,
  52 00127                       FILE *fp,
  53 00128                       \textcolor{keywordtype}{int} energies);
  54 00129
  55 00130 \textcolor{keywordtype}{void} putoutpU\_prob\_bin\_par( \textcolor{keywordtype}{double} **pU,
  56 00131                             \textcolor{keywordtype}{int} length,
  57 00132                             \textcolor{keywordtype}{int} ulength,
  58 00133                             FILE *fp,
  59 00134                             \textcolor{keywordtype}{int} energies,
  60 00135                             \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
  61 00136
  62 00151 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga9acb00ee10e96b1ca4ea394cd8bcec75}{putoutpU\_prob\_bin}(\textcolor{keywordtype}{double} **pU,
  63 00152                           \textcolor{keywordtype}{int} length,
  64 00153                           \textcolor{keywordtype}{int} ulength,
  65 00154                           FILE *fp,
  66 00155                           \textcolor{keywordtype}{int} energies);
  67 00156
  68 00162 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{init\_pf\_foldLP}(\textcolor{keywordtype}{int} length));
  69 00163
  70 00164 \textcolor{preprocessor}{#endif}
  71 \end{DoxyCode}