binaries/src/ViennaRNA/doc/latex/PS__dot_8h_source.tex

   1 \hypertarget{PS__dot_8h}{\section{P\-S\-\_\-dot.\-h}
   2 \label{PS__dot_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-P\-S\-\_\-dot.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-P\-S\-\_\-dot.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PS\_DOT\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PS\_DOT\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00005 \textcolor{preprocessor}{#include "\hyperlink{plot__layouts_8h}{plot\_layouts.h}"}
  11 00006
  12 00007 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
  13 00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
  14 00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
  15 00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
  16 00011 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
  17 00012 \textcolor{preprocessor}{}
  18 00019 \textcolor{comment}{/* write PostScript drawing of structure to file with annotation */}
  19 00020 \textcolor{keywordtype}{int} PS\_rna\_plot\_snoop\_a(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  20 00021                         \textcolor{keywordtype}{char} *structure,
  21 00022                         \textcolor{keywordtype}{char} *ssfile,
  22 00023                         \textcolor{keywordtype}{int} *relative\_access,
  23 00024                         \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seqs[]);
  24 00025
  25 00038 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a0873c7cc4cd7a11c9a2cea19dde7e9c9}{PS\_rna\_plot}(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  26 00039                 \textcolor{keywordtype}{char} *structure,
  27 00040                 \textcolor{keywordtype}{char} *file);
  28 00041
  29 00060 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a47856b2504b566588785597b6ebb8271}{PS\_rna\_plot\_a}(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  30 00061                   \textcolor{keywordtype}{char} *structure,
  31 00062                   \textcolor{keywordtype}{char} *file,
  32 00063                   \textcolor{keywordtype}{char} *pre,
  33 00064                   \textcolor{keywordtype}{char} *post);
  34 00065
  35 00066 \textcolor{keywordtype}{int} PS\_rna\_plot\_a\_gquad(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  36 00067                         \textcolor{keywordtype}{char} *structure,
  37 00068                         \textcolor{keywordtype}{char} *ssfile,
  38 00069                         \textcolor{keywordtype}{char} *pre,
  39 00070                         \textcolor{keywordtype}{char} *post);
  40 00071
  41 00084 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a70834bc8c0aad4fe6824ff76ccb8f329}{gmlRNA}( \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  42 00085             \textcolor{keywordtype}{char} *structure,
  43 00086             \textcolor{keywordtype}{char} *ssfile,
  44 00087             \textcolor{keywordtype}{char} option);
  45 00088
  46 00099 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_add368528755f9a830727b680243541df}{ssv\_rna\_plot}( \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  47 00100                   \textcolor{keywordtype}{char} *structure,
  48 00101                   \textcolor{keywordtype}{char} *ssfile);
  49 00102
  50 00111 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_ae7853539b5df98f294b4af434e979304}{svg\_rna\_plot}( \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  51 00112                   \textcolor{keywordtype}{char} *structure,
  52 00113                   \textcolor{keywordtype}{char} *ssfile);
  53 00114
  54 00123 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a2f6d5953e6a323df898896b8d6614483}{xrna\_plot}(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  55 00124               \textcolor{keywordtype}{char} *structure,
  56 00125               \textcolor{keywordtype}{char} *ssfile);
  57 00126
  58 00127 \textcolor{keywordtype}{int} PS\_color\_dot\_plot(\textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  59 00128                       \hyperlink{structcpair}{cpair} *pi,
  60 00129                       \textcolor{keywordtype}{char} *filename);
  61 00130
  62 00131 \textcolor{keywordtype}{int} PS\_color\_dot\_plot\_turn( \textcolor{keywordtype}{char} *seq,
  63 00132                             \hyperlink{structcpair}{cpair} *pi,
  64 00133                             \textcolor{keywordtype}{char} *filename,
  65 00134                             \textcolor{keywordtype}{int} winSize);
  66 00135
  67 00155 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a00ea223b5cf02eb2faae5ff29f0d5e12}{PS\_dot\_plot\_list}( \textcolor{keywordtype}{char} *seq,
  68 00156                       \textcolor{keywordtype}{char} *filename,
  69 00157                       \hyperlink{structplist}{plist} *pl,
  70 00158                       \hyperlink{structplist}{plist} *mf,
  71 00159                       \textcolor{keywordtype}{char} *comment);
  72 00160
  73 00161 \textcolor{keywordtype}{int} PS\_dot\_plot\_turn( \textcolor{keywordtype}{char} *seq,
  74 00162                       \textcolor{keyword}{struct} \hyperlink{structplist}{plist} *pl,
  75 00163                       \textcolor{keywordtype}{char} *filename,
  76 00164                       \textcolor{keywordtype}{int} winSize);
  77 00165
  78 00166 \textcolor{keywordtype}{int} PS\_color\_aln( \textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure,
  79 00167                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *filename,
  80 00168                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seqs[],
  81 00169                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *names[]);
  82 00170
  83 00174 \textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_aab48d4dac655d688abe921389ac2847c}{aliPS\_color\_aln}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure,
  84 00175                     \textcolor{keyword}{const} \textcolor{keywordtype}{char} *filename,
  85 00176                     \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seqs[],
  86 00177                     \textcolor{keyword}{const} \textcolor{keywordtype}{char} *names[]);
  87 00178
  88 00179
  89 00195 DEPRECATED(\textcolor{keywordtype}{int} \hyperlink{PS__dot_8h_a689a97a7e3b8a2df14728b8204d9d57b}{PS\_dot\_plot}( \textcolor{keywordtype}{char} *\textcolor{keywordtype}{string},
  90 00196                             \textcolor{keywordtype}{char} *file));
  91 00197 \textcolor{preprocessor}{#endif}
  92 \end{DoxyCode}