binaries/src/ViennaRNA/doc/latex/RNAstruct_8h_source.tex

   1 \hypertarget{RNAstruct_8h}{\section{R\-N\-Astruct.\-h}
   2 \label{RNAstruct_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-R\-N\-Astruct.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-R\-N\-Astruct.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_RNASTRUCT\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_RNASTRUCT\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00024 \textcolor{preprocessor}{#define STRUC     2000}
  10 00025 \textcolor{preprocessor}{}
  11 00033 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a07b7e90e712559a1992fba3ac6d21bbd}{b2HIT}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);             \textcolor{comment}{/* Full   -> HIT    [incl. root] */}
  12 00034
  13 00042 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a9c80d92391f2833549a8b6dac92233f0}{b2C}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);               \textcolor{comment}{/* Full   -> Coarse [incl. root] */}
  14 00043
  15 00052 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a5cd2feb367feeacad0c03cb7ddba5f10}{b2Shapiro}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);         \textcolor{comment}{/* Full -> weighted Shapiro [i.r.] */}
  16 00053
  17 00060 \textcolor{keywordtype}{char} *\hyperlink{RNAstruct_8h_a880d33066dd95441e5fbb73c57ed1c3e}{add\_root}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);                   \textcolor{comment}{/* \{Tree\} -> (\{Tree\}R)          */}
  18 00061
  19 00069 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_abe3d815b420dc4553bfb23511198b4c6}{expand\_Shapiro}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *coarse);
  20 00070
  21 00071 \textcolor{comment}{/* add S for stacks to coarse struct */}
  22 00079 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a78d73cd54a068ef2812812771cdddc6f}{expand\_Full}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);      \textcolor{comment}{/* Full   -> FFull         */}
  23 00080
  24 00088 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a260c4b622093b76a883bf96628280de1}{unexpand\_Full}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *ffull);        \textcolor{comment}{/* FFull  -> Full          */}
  25 00089
  26 00096 \textcolor{keywordtype}{char}  *\hyperlink{RNAstruct_8h_a09a80253ac7b6bae606871ba7c6e5136}{unweight}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *wcoarse);           \textcolor{comment}{/* remove weights from coarse struct */}
  27 00097
  28 00107 \textcolor{keywordtype}{void}   \hyperlink{RNAstruct_8h_a1054c4477d53b31d79d4cb132100e87a}{unexpand\_aligned\_F}(\textcolor{keywordtype}{char} *align[2]);
  29 00108
  30 00119 \textcolor{keywordtype}{void}   \hyperlink{RNAstruct_8h_a3c79042e6bf6f01706bf30ec9e69e8ac}{parse\_structure}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *structure);  \textcolor{comment}{/* make structure statistics */}
  31 00120
  32 00125 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a3f31e0e48125601bfa57b52f8b038e8e}{loop\_size}[STRUC];       \textcolor{comment}{/* loop sizes of a structure */}
  33 00126
  34 00130 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a8218c0d581a3fba2a1a56a196abe19a5}{helix\_size}[STRUC];      \textcolor{comment}{/* helix sizes of a structure */}
  35 00131
  36 00135 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_aef14e2f8ab3f61e8e659ba6b9003b08a}{loop\_degree}[STRUC];     \textcolor{comment}{/* loop degrees of a structure */}
  37 00136
  38 00140 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a439fcb9f8d4f9f4d2227fde5fbfecb30}{loops};                  \textcolor{comment}{/* n of loops and stacks */}
  39 00141
  40 00145 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_add2f952597e02d66e1116a9d11d252d6}{unpaired};
  41 00146
  42 00150 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{RNAstruct_8h_a6341cbb704924824e0236c1dce791032}{pairs};        \textcolor{comment}{/* n of unpaired digits and pairs */}
  43 00151
  44 00152 \textcolor{preprocessor}{#endif}
  45 \end{DoxyCode}