binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex

   1 \hypertarget{fold__vars_8h}{\section{fold\-\_\-vars.\-h}
   2 \label{fold__vars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
  10 00005
  11 00012 \textcolor{preprocessor}{#define PUBLIC}
  12 00013 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define PRIVATE static}
  13 00014 \textcolor{preprocessor}{}
  14 00018 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a0afc287c2464866d94858c39175154af}{fold\_constrained};
  15 00019
  16 00027 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a097eccaabd6ae8b4fef83cccff85bb5d}{noLonelyPairs};
  17 00028
  18 00050 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a72b511ed1201f7e23ec437e468790d74}{dangles};
  19 00051
  20 00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_abf380d09e4f1ab94fc6af57cf0ad5d32}{noGU};
  21 00056
  22 00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_aa8d1c7b92489179e1eafa562b7bdd259}{no\_closingGU};
  23 00061
  24 00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a4f6265bdf0ead7ff4628a360adbfd77e}{tetra\_loop};
  25 00068
  26 00076 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_afb1ef1166da85092ae8a325e02dcae71}{energy\_set};
  27 00077
  28 00081 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ};
  29 00082
  30 00086 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af2763d55a74663a5e60652b8880baa5b}{csv};
  31 00087
  32 00091 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_ac408868ba00671cbc7d1d535105af045}{oldAliEn};
  33 00095 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a0656afca1d2853f9ee6591172f5638de}{ribo};
  34 00096
  35 00101 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a5dbaa0cca2c8c82048a0f0e38e164944}{RibosumFile};
  36 00102
  37 00110 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a2695d91cc535d09c2eae5c3884e2ec64}{nonstandards};
  38 00111
  39 00118 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature};
  40 00119
  41 00124 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af349001ad3b4d008d0051d935b1b6261}{james\_rule};
  42 00125
  43 00129 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_a80c3c5fd35e7479704cc91d2d0367743}{logML};
  44 00130
  45 00142 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_ab9b2c3a37a5516614c06d0ab54b97cda}{cut\_point};
  46 00143
  47 00150 \textcolor{keyword}{extern} \hyperlink{structbondT}{bondT}  *\hyperlink{fold__vars_8h_a0244a629b5ab4f58b77590c3dfd130dc}{base\_pair};
  48 00151
  49 00157 \textcolor{keyword}{extern} FLT\_OR\_DBL *\hyperlink{fold__vars_8h_a0f5757427fd5f2f79d6fca0081cd5a52}{pr};
  50 00158
  51 00165 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}   *\hyperlink{fold__vars_8h_a92089ae3a51b5d75a14ce9cc29cc8317}{iindx};
  52 00166
  53 00178 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\_scale};
  54 00179
  55 00186 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_ad512b5dd4dbec60faccfe137bb474489}{do\_backtrack};
  56 00187
  57 00195 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} \hyperlink{fold__vars_8h_a83bdb43472a259c71e69fa9f70f420c3}{backtrack\_type};
  58 00196
  59 00200 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a25f2bdcdf56e813d288845484a13d704}{gquad};
  60 00201
  61 00202
  62 00203 \textcolor{keywordtype}{char} * option\_string(\textcolor{keywordtype}{void});
  63 00204
  64 00215 \textcolor{keywordtype}{void} \hyperlink{fold__vars_8h_a4c3257186a796182462f18a5480ac8b3}{set\_model\_details}(\hyperlink{structmodel__detailsT}{model\_detailsT} *md);
  65 00216
  66 00217 \textcolor{preprocessor}{#endif}
  67 \end{DoxyCode}