1 2010-06-17 Release 0.0.1 (Dubliniensis)
3 First "release" as program has been able for a while to perform
4 all basic tasks without problems.
6 Non-standard features already built-in include:
7 HMM-iteration (using HMMER for building an HMM) and guide-tree
8 iteration. On top of that HMM input works fine and
9 background-frequencies are added to the HHalign process.
11 Known issues: RNA/DNA alignment is considered buggy. Aligned
12 sequences have to be dealigned for HHalign to work properly.
14 The HMMER version message can be ignored if no HMM-iteration