1 # Makefile.in generated by automake 1.10.2 from Makefile.am.
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
17 # Andreas Wilm (UCD): 2007-12-10
18 # Generated using the following sites
19 # http://www.openismus.com/documents/linux/automake/automake.shtml
20 # http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
22 pkgdatadir = $(datadir)/@PACKAGE@
23 pkglibdir = $(libdir)/@PACKAGE@
24 pkgincludedir = $(includedir)/@PACKAGE@
25 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
26 install_sh_DATA = $(install_sh) -c -m 644
27 install_sh_PROGRAM = $(install_sh) -c
28 install_sh_SCRIPT = $(install_sh) -c
29 INSTALL_HEADER = $(INSTALL_DATA)
30 transform = $(program_transform_name)
37 build_triplet = @build@
39 target_triplet = @target@
41 DIST_COMMON = README $(am__configure_deps) $(srcdir)/Makefile.am \
42 $(srcdir)/Makefile.in $(top_srcdir)/configure config.guess \
43 config.sub depcomp install-sh missing
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46 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
48 am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
49 configure.lineno config.status.lineno
50 mkinstalldirs = $(install_sh) -d
51 CONFIG_HEADER = $(top_builddir)/src/config.h
55 RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
56 html-recursive info-recursive install-data-recursive \
57 install-dvi-recursive install-exec-recursive \
58 install-html-recursive install-info-recursive \
59 install-pdf-recursive install-ps-recursive install-recursive \
60 installcheck-recursive installdirs-recursive pdf-recursive \
61 ps-recursive uninstall-recursive
62 RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \
63 distclean-recursive maintainer-clean-recursive
66 DIST_SUBDIRS = $(SUBDIRS)
67 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
68 distdir = $(PACKAGE)-$(VERSION)
69 top_distdir = $(distdir)
70 am__remove_distdir = \
71 { test ! -d $(distdir) \
72 || { find $(distdir) -type d ! -perm -200 -exec chmod u+w {} ';' \
73 && rm -fr $(distdir); }; }
74 DIST_ARCHIVES = $(distdir).tar.gz
76 distuninstallcheck_listfiles = find . -type f -print
77 distcleancheck_listfiles = find . -type f -print
81 AUTOHEADER = @AUTOHEADER@
85 CCDEPMODE = @CCDEPMODE@
87 CLUSTALW_NAME = @CLUSTALW_NAME@
88 CLUSTALW_VERSION = @CLUSTALW_VERSION@
92 CXXDEPMODE = @CXXDEPMODE@
94 CYGPATH_W = @CYGPATH_W@
104 INSTALL_DATA = @INSTALL_DATA@
105 INSTALL_PROGRAM = @INSTALL_PROGRAM@
106 INSTALL_SCRIPT = @INSTALL_SCRIPT@
107 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
111 LTLIBOBJS = @LTLIBOBJS@
112 MAKEINFO = @MAKEINFO@
116 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
117 PACKAGE_NAME = @PACKAGE_NAME@
118 PACKAGE_STRING = @PACKAGE_STRING@
119 PACKAGE_TARNAME = @PACKAGE_TARNAME@
120 PACKAGE_VERSION = @PACKAGE_VERSION@
121 PATH_SEPARATOR = @PATH_SEPARATOR@
123 SET_MAKE = @SET_MAKE@
127 abs_builddir = @abs_builddir@
128 abs_srcdir = @abs_srcdir@
129 abs_top_builddir = @abs_top_builddir@
130 abs_top_srcdir = @abs_top_srcdir@
131 ac_ct_CC = @ac_ct_CC@
132 ac_ct_CXX = @ac_ct_CXX@
133 am__include = @am__include@
134 am__leading_dot = @am__leading_dot@
135 am__quote = @am__quote@
137 am__untar = @am__untar@
140 build_alias = @build_alias@
141 build_cpu = @build_cpu@
142 build_os = @build_os@
143 build_vendor = @build_vendor@
144 builddir = @builddir@
146 datarootdir = @datarootdir@
149 exec_prefix = @exec_prefix@
151 host_alias = @host_alias@
152 host_cpu = @host_cpu@
154 host_vendor = @host_vendor@
156 includedir = @includedir@
158 install_sh = @install_sh@
160 libexecdir = @libexecdir@
161 localedir = @localedir@
162 localstatedir = @localstatedir@
165 oldincludedir = @oldincludedir@
168 program_transform_name = @program_transform_name@
171 sharedstatedir = @sharedstatedir@
173 sysconfdir = @sysconfdir@
175 target_alias = @target_alias@
176 target_cpu = @target_cpu@
177 target_os = @target_os@
178 target_vendor = @target_vendor@
179 top_build_prefix = @top_build_prefix@
180 top_builddir = @top_builddir@
181 top_srcdir = @top_srcdir@
183 # we do not use GNU-style files: NEWS README AUTHORS ChangeLog
184 AUTOMAKE_OPTIONS = foreign
186 EXTRA_DIST = README LICENSE clustalw_help
192 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
194 case '$(am__configure_deps)' in \
196 echo ' cd $(srcdir) && $(AUTOMAKE) --foreign '; \
197 cd $(srcdir) && $(AUTOMAKE) --foreign \
202 echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign Makefile'; \
203 cd $(top_srcdir) && \
204 $(AUTOMAKE) --foreign Makefile
206 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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210 $(SHELL) ./config.status;; \
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213 cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
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217 $(SHELL) ./config.status --recheck
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220 cd $(srcdir) && $(AUTOCONF)
221 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
222 cd $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
224 # This directory's subdirectories are mostly independent; you can cd
225 # into them and run `make' without going through this Makefile.
226 # To change the values of `make' variables: instead of editing Makefiles,
227 # (1) if the variable is set in `config.status', edit `config.status'
228 # (which will cause the Makefiles to be regenerated when you run `make');
229 # (2) otherwise, pass the desired values on the `make' command line.
230 $(RECURSIVE_TARGETS):
232 for f in x $$MAKEFLAGS; do \
235 *k*) failcom='fail=yes';; \
239 target=`echo $@ | sed s/-recursive//`; \
240 list='$(SUBDIRS)'; for subdir in $$list; do \
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248 (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
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252 $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
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257 for f in x $$MAKEFLAGS; do \
260 *k*) failcom='fail=yes';; \
265 distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
266 *) list='$(SUBDIRS)' ;; \
268 rev=''; for subdir in $$list; do \
269 if test "$$subdir" = "."; then :; else \
270 rev="$$subdir $$rev"; \
274 target=`echo $@ | sed s/-recursive//`; \
275 for subdir in $$rev; do \
276 echo "Making $$target in $$subdir"; \
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278 local_target="$$target-am"; \
280 local_target="$$target"; \
282 (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
284 done && test -z "$$fail"
286 list='$(SUBDIRS)'; for subdir in $$list; do \
287 test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
290 list='$(SUBDIRS)'; for subdir in $$list; do \
291 test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
294 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
295 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
296 unique=`for i in $$list; do \
297 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
299 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
300 END { if (nonempty) { for (i in files) print i; }; }'`; \
304 TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
305 $(TAGS_FILES) $(LISP)
308 if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
309 include_option=--etags-include; \
312 include_option=--include; \
315 list='$(SUBDIRS)'; for subdir in $$list; do \
316 if test "$$subdir" = .; then :; else \
317 test ! -f $$subdir/TAGS || \
318 tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
321 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
322 unique=`for i in $$list; do \
323 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
325 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
326 END { if (nonempty) { for (i in files) print i; }; }'`; \
327 if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
328 test -n "$$unique" || unique=$$empty_fix; \
329 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
333 CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
334 $(TAGS_FILES) $(LISP)
336 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
337 unique=`for i in $$list; do \
338 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
340 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
341 END { if (nonempty) { for (i in files) print i; }; }'`; \
342 test -z "$(CTAGS_ARGS)$$tags$$unique" \
343 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
347 here=`$(am__cd) $(top_builddir) && pwd` \
348 && cd $(top_srcdir) \
349 && gtags -i $(GTAGS_ARGS) $$here
352 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
354 distdir: $(DISTFILES)
355 $(am__remove_distdir)
356 test -d $(distdir) || mkdir $(distdir)
357 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
358 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
359 list='$(DISTFILES)'; \
360 dist_files=`for file in $$list; do echo $$file; done | \
361 sed -e "s|^$$srcdirstrip/||;t" \
362 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
363 case $$dist_files in \
364 */*) $(MKDIR_P) `echo "$$dist_files" | \
365 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
368 for file in $$dist_files; do \
369 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
370 if test -d $$d/$$file; then \
371 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
372 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
373 cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
375 cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
377 test -f $(distdir)/$$file \
378 || cp -p $$d/$$file $(distdir)/$$file \
382 list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
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393 am__remove_distdir=: \
394 am__skip_length_check=: \
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401 ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
402 ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
403 || chmod -R a+r $(distdir)
405 tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
406 $(am__remove_distdir)
409 tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
410 $(am__remove_distdir)
413 tardir=$(distdir) && $(am__tar) | lzma -9 -c >$(distdir).tar.lzma
414 $(am__remove_distdir)
417 tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
418 $(am__remove_distdir)
421 shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
422 $(am__remove_distdir)
425 -rm -f $(distdir).zip
426 zip -rq $(distdir).zip $(distdir)
427 $(am__remove_distdir)
429 dist dist-all: distdir
430 tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
431 $(am__remove_distdir)
433 # This target untars the dist file and tries a VPATH configuration. Then
434 # it guarantees that the distribution is self-contained by making another
437 case '$(DIST_ARCHIVES)' in \
439 GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
441 bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
443 unlzma -c $(distdir).tar.lzma | $(am__untar) ;;\
445 uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
447 GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
449 unzip $(distdir).zip ;;\
451 chmod -R a-w $(distdir); chmod a+w $(distdir)
452 mkdir $(distdir)/_build
453 mkdir $(distdir)/_inst
455 dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
456 && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
457 && cd $(distdir)/_build \
458 && ../configure --srcdir=.. --prefix="$$dc_install_base" \
459 $(DISTCHECK_CONFIGURE_FLAGS) \
460 && $(MAKE) $(AM_MAKEFLAGS) \
461 && $(MAKE) $(AM_MAKEFLAGS) dvi \
462 && $(MAKE) $(AM_MAKEFLAGS) check \
463 && $(MAKE) $(AM_MAKEFLAGS) install \
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465 && $(MAKE) $(AM_MAKEFLAGS) uninstall \
466 && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
468 && chmod -R a-w "$$dc_install_base" \
470 (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
471 && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
472 && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
473 && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
474 distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
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477 && $(MAKE) $(AM_MAKEFLAGS) dist \
478 && rm -rf $(DIST_ARCHIVES) \
479 && $(MAKE) $(AM_MAKEFLAGS) distcleancheck
480 $(am__remove_distdir)
481 @(echo "$(distdir) archives ready for distribution: "; \
482 list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
483 sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
485 @cd $(distuninstallcheck_dir) \
486 && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
487 || { echo "ERROR: files left after uninstall:" ; \
488 if test -n "$(DESTDIR)"; then \
489 echo " (check DESTDIR support)"; \
491 $(distuninstallcheck_listfiles) ; \
493 distcleancheck: distclean
494 @if test '$(srcdir)' = . ; then \
495 echo "ERROR: distcleancheck can only run from a VPATH build" ; \
498 @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
499 || { echo "ERROR: files left in build directory after distclean:" ; \
500 $(distcleancheck_listfiles) ; \
503 check: check-recursive
505 installdirs: installdirs-recursive
507 install: install-recursive
508 install-exec: install-exec-recursive
509 install-data: install-data-recursive
510 uninstall: uninstall-recursive
513 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
515 installcheck: installcheck-recursive
517 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
518 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
519 `test -z '$(STRIP)' || \
520 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
526 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
528 maintainer-clean-generic:
529 @echo "This command is intended for maintainers to use"
530 @echo "it deletes files that may require special tools to rebuild."
531 clean: clean-recursive
533 clean-am: clean-generic mostlyclean-am
535 distclean: distclean-recursive
536 -rm -f $(am__CONFIG_DISTCLEAN_FILES)
538 distclean-am: clean-am distclean-generic distclean-tags
552 install-dvi: install-dvi-recursive
556 install-html: install-html-recursive
558 install-info: install-info-recursive
562 install-pdf: install-pdf-recursive
564 install-ps: install-ps-recursive
568 maintainer-clean: maintainer-clean-recursive
569 -rm -f $(am__CONFIG_DISTCLEAN_FILES)
570 -rm -rf $(top_srcdir)/autom4te.cache
572 maintainer-clean-am: distclean-am maintainer-clean-generic
574 mostlyclean: mostlyclean-recursive
576 mostlyclean-am: mostlyclean-generic
588 .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
591 .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
592 all all-am am--refresh check check-am clean clean-generic \
593 ctags ctags-recursive dist dist-all dist-bzip2 dist-gzip \
594 dist-lzma dist-shar dist-tarZ dist-zip distcheck distclean \
595 distclean-generic distclean-tags distcleancheck distdir \
596 distuninstallcheck dvi dvi-am html html-am info info-am \
597 install install-am install-data install-data-am install-dvi \
598 install-dvi-am install-exec install-exec-am install-html \
599 install-html-am install-info install-info-am install-man \
600 install-pdf install-pdf-am install-ps install-ps-am \
601 install-strip installcheck installcheck-am installdirs \
602 installdirs-am maintainer-clean maintainer-clean-generic \
603 mostlyclean mostlyclean-generic pdf pdf-am ps ps-am tags \
604 tags-recursive uninstall uninstall-am
606 # Tell versions [3.59,3.63) of GNU make to not export all variables.
607 # Otherwise a system limit (for SysV at least) may be exceeded.