4 * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
8 #include "../alignment/Alignment.h"
9 #include "../general/clustalw.h"
18 bool iterationOnTreeNode(int numSeqsProf1, int numSeqsProf2, int& prfLength1,
19 int& prfLength2, SeqArray* seqArray);
20 bool removeFirstIterate(Alignment* alnPtr);
22 void printSeqArray(SeqArray* arrayToPrint);