4 * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
6 #ifndef PROFILESTANDARD_H
7 #define PROFILESTANDARD_H
9 #include "../alignment/Alignment.h"
10 #include "ProfileBase.h"
15 class ProfileStandard : public ProfileBase
19 ProfileStandard(int prfLen, int firstS, int lastS);
21 void calcStandardProfile(SeqArray* alignment, vector<int>* seqWeight);