4 * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
6 #ifndef UNROOTEDCLUSTERTREE_H
7 #define UNROOTEDCLUSTERTREE_H
8 #include "ClusterTree.h"
13 class UnRootedClusterTree : private ClusterTree
16 UnRootedClusterTree();
17 void treeFromAlignment(TreeNames* treeNames, Alignment *alignPtr);
18 void treeFromDistMatrix(DistMatrix* distMat, Alignment *alignPtr, int seq1,
19 int nSeqs, string& phylipName);
20 void bootstrapTree(TreeNames* treeNames, Alignment *alignPtr);
23 ClusterTreeOutput* outputTree;