2 # makefile for fasta3, fasta3_t. Use makefile.pvm for pvcompxx.
5 # Dec 8, 2005 - with gcc4.0.2 (or .1) under Redhat Linux Fedora FC4 -03 breaks the alignment code
10 #CC=gcc -Wall -pedantic -ansi -g -O
12 #CC= /usr/local/parasoft/bin.linux2/insure -g -DDEBUG
14 # EBI uses the following with pgcc, -O3 does not work:
15 # CC= pgcc -O2 -pipe -mcpu=pentiumpro -march=pentiumpro -fomit-frame-pointer
17 # this file works for x86 LINUX
19 # use options below for superfamily validations
20 #CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -D_REENTRANT -DBIG_LIB64 -D_LARGE_FILE_SOURCE -DUSE_FSEEKO -D_FILE_OFFSET_BITS=64 -DHAS_INTTYPES -DSAMP_STATS
23 CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC
24 # -I/usr/local/include/mysql -DMYSQL_DB
26 #(for mySQL databases) (also requires change to Makefile34.common)
29 #LIB_M = -L/usr/local/lib/mysql -lmysqlclient -lm
42 DROPNFA_O = drop_nfa.o
45 DROPTFA_O = drop_tfa.o
47 # renamed (fasta33) programs
48 include Makefile34m.common
49 # conventional (fasta3) names
50 # include Makefile.common