2 # makefile for fasta3, fasta3_t
6 CC= cc -g -O2 +Onolimit -Wl,+pi,1M -Wl,+pd,1M -Wl,+mergeseg
9 #CC=gcc -Wall -pedantic -ansi -g -O
10 #CC= /usr/local/parasoft/bin.linux2/insure -g -DDEBUG
12 # EBI uses the following with pgcc, -O3 does not work:
13 # CC= pgcc -O2 -pipe -mcpu=pentiumpro -march=pentiumpro -fomit-frame-pointer
15 # this file works for x86 LINUX
17 # use options below for superfamily validations
18 #CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -DBIG_LIB64 -D_LARGE_FILE_SOURCE -DUSE_FSEEKO -D_FILE_OFFSET_BITS=64 -DHAS_INTTYPES -DSAMP_STATS
21 CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC
22 # -I/usr/local/include/mysql -DMYSQL_DB
24 #(for mySQL databases) (also requires change to Makefile34.common)
27 #LIB_M = -L/usr/local/lib/mysql -lmysqlclient -lm
40 DROPNFA_O = drop_nfa.o
43 DROPTFA_O = drop_tfa.o
45 # renamed (fasta33) programs
46 include Makefile34m.common
47 # conventional (fasta3) names
48 # include Makefile.common