2 # makefile for fasta3, fasta3_t. Use makefile.pvm for pvcompxx.
4 # On the version of linux that I use, MININT is defined and causes a warning
5 # as dropnfa.c is compiled. Unfortunately, using the Linux definition of
6 # MININT causes the code to break. Do not change the MININT definition
7 # in dropnfa.c (wrp 3/19/1998)
9 # for DEC/Compaq Alpha/LINUX, use gcc -mieee -g to avoid buggy compilers
14 #CC=/opt/parasoft/bin.linux2/insure -g -DDEBUG
16 # this file works for x86 LINUX
19 CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -D_REENTRANT -I/usr/include/mysql -DMYSQL_DB -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC -DM10_CONS
21 # use options below for superfamily validations
22 #CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -D_REENTRANT
24 # -I/usr/local/include/mysql -DMYSQL_DB
26 #(for mySQL databases) (also requires change to Makefile34.common)
29 #LIB_M = -L/usr/lib/mysql -lmysqlclient -lm
42 DROPNFA_O = drop_nfa.o
45 DROPTFA_O = drop_tfa.o
47 # renamed (fasta34) programs
48 include Makefile34m.common_mysql
49 # conventional (fasta3) names
50 # include Makefile.common