2 # $Name: fa_34_26_5 $ - $Id: Makefile.mpi4,v 1.26 2006/12/12 16:58:51 wrp Exp $
6 # Makefile for MPI versions of the parallel library comparison programs.
7 # this file is derived from Makefile.pvm, with only a few differences:
8 # (1) -DMPI_SRC instead of -DPVM_SRC
9 # (2) programs are mp34comp*, ms34comp*, and mu34comp* rather than pv34comp*, etc.
10 # (3) MPI does not require/allow a "worker" program, thus no c3.work*
13 # setenv MPI_CC gcc-3.3 for best performance
15 MPI_ROOT = /m0/xshare/mpich2
16 MPICC = ${MPI_ROOT}/bin/mpicc
18 CC= ${MPICC} -g -falign-loops=32 -O3 -mcpu=7450 -faltivec -DSW_ALTIVEC
19 NCC= ${MPICC} -g -falign-loops=32 -O3 -mcpu=7450 -faltivec -DSW_ALTIVEC
22 #ARCH = ALPHAMP (get from $ARCH)
24 PLIB = -L${MPI_ROOT}/lib -lmpich
25 XDIR = /home/slib/mpi/bin/
28 CFLAGS= -DMPI_SRC -DUNIX -DPCOMPLIB -DBFR=120 -DSHOWSIM -I${MPI_ROOT}/include -DSRAND=srand -DRAND=random -c -DHAS_INTTYPES -DSAMP_STATS -DSW_ALTIVEC
29 # -DMYSQL_DB -I/usr/include/mysql
30 # -DSFCHAR="'|'" -DSUPERFAMNUM
32 # standard nxgetaa, no memory mapping for 0 - 6
33 #LGETLIB=getseq.o lgetlib.o
36 # memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
37 LGETLIB=getseq.o lgetlib.o lgetaa_m.o
42 SHOWBESTC = mshowbest.c
43 SHOWALIGN = mshowalign
47 #NCBL_LIB=ncbl2_mlib.o mysql_lib.o
49 #LIB_M= -L/usr/lib/mysql -lmysqlclient -lz -lm
54 DROPGSW_O = dropgsw.o smith_waterman_altivec.o
55 DROPNFA_O = drop_nfa.o
57 include Makefile.mpcom