6 int smin0; /* coordinate of display start in seqc0 */
7 int smin1; /* coordinate of display start in seqc1 */
8 int amin0, amax0; /* coordinate of alignment start in seqc0 */
9 int amin1, amax1; /* coordinate of alignment start in seqc1 */
12 int llcntx, llcntx_flg, showall;
15 int llrev, llfact, llmult;
18 int a_len; /* consensus alignment length */
19 int nident, nsim, ngap_q, ngap_l, nfs; /* number of identities, gaps in q, l */
20 long d_start0,d_stop0;
21 long d_start1,d_stop1;
25 int min0, max0; /* boundaries of alignment in aa0 */
26 int min1, max1; /* boundaries of alignment in aa1 */