1 /* Concurrent read version */
3 /* $Name: fa_34_26_5 $ - $Id: mw.h,v 1.20 2006/03/20 17:38:15 wrp Exp $ */
7 #include "aln_structs.h"
13 typedef off_t fseek_t;
18 int n1; /* sequence length */
19 int *n1tot_p; /* pointer (or NULL) to long sequence length */
20 int score[3]; /* score */
21 int sw_score; /* do_walign() score */
28 struct lmf_str *m_file_p;
36 struct a_struct aln_d; /* these values are used by -m9 */
37 struct a_res_str a_res; /* need only a_res, not a_res[2], because different frames
38 for the same sequence are stored separately */
40 float percent, gpercent;