binaries/src/muscle/gatest.cpp

   1 #include "muscle.h"\r
   2 #include "pwpath.h"\r
   3 #include "timing.h"\r
   4 #include "textfile.h"\r
   5 #include "msa.h"\r
   6 #include "profile.h"\r
   7 \r
   8 SCORE GlobalAlign(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
   9   unsigned uLengthB, PWPath &Path)\r
  10         {\r
  11         if (g_bDiags)\r
  12                 return GlobalAlignDiags(PA, uLengthA, PB, uLengthB, Path);\r
  13         else\r
  14                 return GlobalAlignNoDiags(PA, uLengthA, PB, uLengthB, Path);\r
  15         }\r
  16 \r
  17 SCORE GlobalAlignNoDiags(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
  18   unsigned uLengthB, PWPath &Path)\r
  19         {\r
  20         switch (g_PPScore)\r
  21                 {\r
  22         case PPSCORE_LE:\r
  23                 return GlobalAlignLA(PA, uLengthA, PB, uLengthB, Path);\r
  24 \r
  25         case PPSCORE_SP:\r
  26                 return GlobalAlignNS(PA, uLengthA, PB, uLengthB, Path);\r
  27 \r
  28         case PPSCORE_SV:\r
  29                 return GlobalAlignSimple(PA, uLengthA, PB, uLengthB, Path);\r
  30                 }\r
  31         return 0;\r
  32         }\r