1 #ifndef MSADistMAFFT_h
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2 #define MSADistMAFFT_h
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7 extern double PctIdToMAFFTDist(double dPctId);
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9 class MSADistMAFFT : public MSADist
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12 virtual double ComputeDist(const MSA &msa, unsigned uSeqIndex1,
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13 unsigned uSeqIndex2)
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15 double dPctId = msa.GetPctIdentityPair(uSeqIndex1, uSeqIndex2);
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16 //if (dPctId < 0.05)
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18 //double dDist = -log(dPctId);
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20 return PctIdToMAFFTDist(dPctId);
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24 #endif // MSADistMAFFT_h
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