binaries/src/muscle/muscle.vcproj

   1 <?xml version="1.0" encoding="Windows-1252"?>\r
   2 <VisualStudioProject\r
   3         ProjectType="Visual C++"\r
   4         Version="9.00"\r
   5         Name="muscle"\r
   6         ProjectGUID="{57FBAB99-B961-4B38-B846-CA26D63384F2}"\r
   7         RootNamespace="muscle3.6"\r
   8         Keyword="Win32Proj"\r
   9         TargetFrameworkVersion="131072"\r
  10         >\r
  11         <Platforms>\r
  12                 <Platform\r
  13                         Name="Win32"\r
  14                 />\r
  15         </Platforms>\r
  16         <ToolFiles>\r
  17         </ToolFiles>\r
  18         <Configurations>\r
  19                 <Configuration\r
  20                         Name="Debug|Win32"\r
  21                         OutputDirectory="Debug"\r
  22                         IntermediateDirectory="Debug"\r
  23                         ConfigurationType="1"\r
  24                         InheritedPropertySheets="$(VCInstallDir)VCProjectDefaults\UpgradeFromVC70.vsprops"\r
  25                         CharacterSet="2"\r
  26                         >\r
  27                         <Tool\r
  28                                 Name="VCPreBuildEventTool"\r
  29                                 Description="SVN version"\r
  30                                 CommandLine="c:\cygwin\bin\bash c:/cygwin/bin/svnver"\r
  31                         />\r
  32                         <Tool\r
  33                                 Name="VCCustomBuildTool"\r
  34                         />\r
  35                         <Tool\r
  36                                 Name="VCXMLDataGeneratorTool"\r
  37                         />\r
  38                         <Tool\r
  39                                 Name="VCWebServiceProxyGeneratorTool"\r
  40                         />\r
  41                         <Tool\r
  42                                 Name="VCMIDLTool"\r
  43                         />\r
  44                         <Tool\r
  45                                 Name="VCCLCompilerTool"\r
  46                                 Optimization="0"\r
  47                                 PreprocessorDefinitions="WIN32;_DEBUG;_CONSOLE;_WIN32_WINNT=0x0400"\r
  48                                 MinimalRebuild="true"\r
  49                                 BasicRuntimeChecks="3"\r
  50                                 RuntimeLibrary="1"\r
  51                                 UsePrecompiledHeader="0"\r
  52                                 BrowseInformation="1"\r
  53                                 WarningLevel="3"\r
  54                                 Detect64BitPortabilityProblems="false"\r
  55                                 DebugInformationFormat="4"\r
  56                         />\r
  57                         <Tool\r
  58                                 Name="VCManagedResourceCompilerTool"\r
  59                         />\r
  60                         <Tool\r
  61                                 Name="VCResourceCompilerTool"\r
  62                         />\r
  63                         <Tool\r
  64                                 Name="VCPreLinkEventTool"\r
  65                         />\r
  66                         <Tool\r
  67                                 Name="VCLinkerTool"\r
  68                                 AdditionalDependencies="psapi.lib user32.lib"\r
  69                                 OutputFile="$(OutDir)/muscle.exe"\r
  70                                 LinkIncremental="2"\r
  71                                 GenerateDebugInformation="true"\r
  72                                 ProgramDatabaseFile="$(OutDir)/muscle.pdb"\r
  73                                 SubSystem="1"\r
  74                                 RandomizedBaseAddress="1"\r
  75                                 DataExecutionPrevention="0"\r
  76                                 TargetMachine="1"\r
  77                         />\r
  78                         <Tool\r
  79                                 Name="VCALinkTool"\r
  80                         />\r
  81                         <Tool\r
  82                                 Name="VCManifestTool"\r
  83                         />\r
  84                         <Tool\r
  85                                 Name="VCXDCMakeTool"\r
  86                         />\r
  87                         <Tool\r
  88                                 Name="VCBscMakeTool"\r
  89                         />\r
  90                         <Tool\r
  91                                 Name="VCFxCopTool"\r
  92                         />\r
  93                         <Tool\r
  94                                 Name="VCAppVerifierTool"\r
  95                         />\r
  96                         <Tool\r
  97                                 Name="VCPostBuildEventTool"\r
  98                         />\r
  99                 </Configuration>\r
 100                 <Configuration\r
 101                         Name="Release|Win32"\r
 102                         OutputDirectory="Release"\r
 103                         IntermediateDirectory="Release"\r
 104                         ConfigurationType="1"\r
 105                         InheritedPropertySheets="$(VCInstallDir)VCProjectDefaults\UpgradeFromVC70.vsprops"\r
 106                         CharacterSet="2"\r
 107                         >\r
 108                         <Tool\r
 109                                 Name="VCPreBuildEventTool"\r
 110                                 Description="SVN version"\r
 111                                 CommandLine="c:\cygwin\bin\bash c:/cygwin/bin/svnver"\r
 112                         />\r
 113                         <Tool\r
 114                                 Name="VCCustomBuildTool"\r
 115                         />\r
 116                         <Tool\r
 117                                 Name="VCXMLDataGeneratorTool"\r
 118                         />\r
 119                         <Tool\r
 120                                 Name="VCWebServiceProxyGeneratorTool"\r
 121                         />\r
 122                         <Tool\r
 123                                 Name="VCMIDLTool"\r
 124                         />\r
 125                         <Tool\r
 126                                 Name="VCCLCompilerTool"\r
 127                                 Optimization="2"\r
 128                                 InlineFunctionExpansion="1"\r
 129                                 OmitFramePointers="true"\r
 130                                 PreprocessorDefinitions="WIN32;NDEBUG;_CONSOLE;_WIN32_WINNT=0x0400"\r
 131                                 StringPooling="true"\r
 132                                 RuntimeLibrary="0"\r
 133                                 EnableFunctionLevelLinking="true"\r
 134                                 ForceConformanceInForLoopScope="true"\r
 135                                 UsePrecompiledHeader="0"\r
 136                                 BrowseInformation="1"\r
 137                                 WarningLevel="3"\r
 138                                 Detect64BitPortabilityProblems="false"\r
 139                                 DebugInformationFormat="3"\r
 140                         />\r
 141                         <Tool\r
 142                                 Name="VCManagedResourceCompilerTool"\r
 143                         />\r
 144                         <Tool\r
 145                                 Name="VCResourceCompilerTool"\r
 146                         />\r
 147                         <Tool\r
 148                                 Name="VCPreLinkEventTool"\r
 149                         />\r
 150                         <Tool\r
 151                                 Name="VCLinkerTool"\r
 152                                 AdditionalDependencies="psapi.lib user32.lib"\r
 153                                 OutputFile="$(OutDir)/muscle.exe"\r
 154                                 LinkIncremental="1"\r
 155                                 GenerateDebugInformation="true"\r
 156                                 SubSystem="1"\r
 157                                 OptimizeReferences="2"\r
 158                                 EnableCOMDATFolding="2"\r
 159                                 RandomizedBaseAddress="1"\r
 160                                 DataExecutionPrevention="0"\r
 161                                 TargetMachine="1"\r
 162                         />\r
 163                         <Tool\r
 164                                 Name="VCALinkTool"\r
 165                         />\r
 166                         <Tool\r
 167                                 Name="VCManifestTool"\r
 168                         />\r
 169                         <Tool\r
 170                                 Name="VCXDCMakeTool"\r
 171                         />\r
 172                         <Tool\r
 173                                 Name="VCBscMakeTool"\r
 174                         />\r
 175                         <Tool\r
 176                                 Name="VCFxCopTool"\r
 177                         />\r
 178                         <Tool\r
 179                                 Name="VCAppVerifierTool"\r
 180                         />\r
 181                         <Tool\r
 182                                 Name="VCPostBuildEventTool"\r
 183                         />\r
 184                 </Configuration>\r
 185         </Configurations>\r
 186         <References>\r
 187         </References>\r
 188         <Files>\r
 189                 <Filter\r
 190                         Name="Source Files"\r
 191                         Filter="cpp;c;cxx;def;odl;idl;hpj;bat;asm"\r
 192                         >\r
 193                         <File\r
 194                                 RelativePath="aligngivenpath.cpp"\r
 195                                 >\r
 196                         </File>\r
 197                         <File\r
 198                                 RelativePath="aligngivenpathsw.cpp"\r
 199                                 >\r
 200                         </File>\r
 201                         <File\r
 202                                 RelativePath="aligntwomsas.cpp"\r
 203                                 >\r
 204                         </File>\r
 205                         <File\r
 206                                 RelativePath="aligntwoprofs.cpp"\r
 207                                 >\r
 208                         </File>\r
 209                         <File\r
 210                                 RelativePath="aln.cpp"\r
 211                                 >\r
 212                         </File>\r
 213                         <File\r
 214                                 RelativePath="alpha.cpp"\r
 215                                 >\r
 216                         </File>\r
 217                         <File\r
 218                                 RelativePath="anchors.cpp"\r
 219                                 >\r
 220                         </File>\r
 221                         <File\r
 222                                 RelativePath="bittraceback.cpp"\r
 223                                 >\r
 224                         </File>\r
 225                         <File\r
 226                                 RelativePath=".\blosum62.cpp"\r
 227                                 >\r
 228                         </File>\r
 229                         <File\r
 230                                 RelativePath="blosumla.cpp"\r
 231                                 >\r
 232                         </File>\r
 233                         <File\r
 234                                 RelativePath="clust.cpp"\r
 235                                 >\r
 236                         </File>\r
 237                         <File\r
 238                                 RelativePath="cluster.cpp"\r
 239                                 >\r
 240                         </File>\r
 241                         <File\r
 242                                 RelativePath="clwwt.cpp"\r
 243                                 >\r
 244                         </File>\r
 245                         <File\r
 246                                 RelativePath="color.cpp"\r
 247                                 >\r
 248                         </File>\r
 249                         <File\r
 250                                 RelativePath="cons.cpp"\r
 251                                 >\r
 252                         </File>\r
 253                         <File\r
 254                                 RelativePath="diaglist.cpp"\r
 255                                 >\r
 256                         </File>\r
 257                         <File\r
 258                                 RelativePath="diffobjscore.cpp"\r
 259                                 >\r
 260                         </File>\r
 261                         <File\r
 262                                 RelativePath="diffpaths.cpp"\r
 263                                 >\r
 264                         </File>\r
 265                         <File\r
 266                                 RelativePath="difftrees.cpp"\r
 267                                 >\r
 268                         </File>\r
 269                         <File\r
 270                                 RelativePath="difftreese.cpp"\r
 271                                 >\r
 272                         </File>\r
 273                         <File\r
 274                                 RelativePath="distcalc.cpp"\r
 275                                 >\r
 276                         </File>\r
 277                         <File\r
 278                                 RelativePath="distfunc.cpp"\r
 279                                 >\r
 280                         </File>\r
 281                         <File\r
 282                                 RelativePath="distpwkimura.cpp"\r
 283                                 >\r
 284                         </File>\r
 285                         <File\r
 286                                 RelativePath="domuscle.cpp"\r
 287                                 >\r
 288                         </File>\r
 289                         <File\r
 290                                 RelativePath="dosp.cpp"\r
 291                                 >\r
 292                         </File>\r
 293                         <File\r
 294                                 RelativePath="dpreglist.cpp"\r
 295                                 >\r
 296                         </File>\r
 297                         <File\r
 298                                 RelativePath="drawtree.cpp"\r
 299                                 >\r
 300                         </File>\r
 301                         <File\r
 302                                 RelativePath="edgelist.cpp"\r
 303                                 >\r
 304                         </File>\r
 305                         <File\r
 306                                 RelativePath="enumopts.cpp"\r
 307                                 >\r
 308                         </File>\r
 309                         <File\r
 310                                 RelativePath="enumtostr.cpp"\r
 311                                 >\r
 312                         </File>\r
 313                         <File\r
 314                                 RelativePath="estring.cpp"\r
 315                                 >\r
 316                         </File>\r
 317                         <File\r
 318                                 RelativePath="fasta.cpp"\r
 319                                 >\r
 320                         </File>\r
 321                         <File\r
 322                                 RelativePath="fasta2.cpp"\r
 323                                 >\r
 324                         </File>\r
 325                         <File\r
 326                                 RelativePath="fastclust.cpp"\r
 327                                 >\r
 328                         </File>\r
 329                         <File\r
 330                                 RelativePath="fastdist.cpp"\r
 331                                 >\r
 332                         </File>\r
 333                         <File\r
 334                                 RelativePath="fastdistjones.cpp"\r
 335                                 >\r
 336                         </File>\r
 337                         <File\r
 338                                 RelativePath="fastdistkbit.cpp"\r
 339                                 >\r
 340                         </File>\r
 341                         <File\r
 342                                 RelativePath="fastdistkmer.cpp"\r
 343                                 >\r
 344                         </File>\r
 345                         <File\r
 346                                 RelativePath="fastdistmafft.cpp"\r
 347                                 >\r
 348                         </File>\r
 349                         <File\r
 350                                 RelativePath="fastdistnuc.cpp"\r
 351                                 >\r
 352                         </File>\r
 353                         <File\r
 354                                 RelativePath="fastscorepath2.cpp"\r
 355                                 >\r
 356                         </File>\r
 357                         <File\r
 358                                 RelativePath="finddiags.cpp"\r
 359                                 >\r
 360                         </File>\r
 361                         <File\r
 362                                 RelativePath="finddiagsn.cpp"\r
 363                                 >\r
 364                         </File>\r
 365                         <File\r
 366                                 RelativePath="glbalign.cpp"\r
 367                                 >\r
 368                         </File>\r
 369                         <File\r
 370                                 RelativePath="glbalign352.cpp"\r
 371                                 >\r
 372                         </File>\r
 373                         <File\r
 374                                 RelativePath="glbaligndiag.cpp"\r
 375                                 >\r
 376                         </File>\r
 377                         <File\r
 378                                 RelativePath="glbalignle.cpp"\r
 379                                 >\r
 380                         </File>\r
 381                         <File\r
 382                                 RelativePath="glbalignsimple.cpp"\r
 383                                 >\r
 384                         </File>\r
 385                         <File\r
 386                                 RelativePath="glbalignsp.cpp"\r
 387                                 >\r
 388                         </File>\r
 389                         <File\r
 390                                 RelativePath="glbalignspn.cpp"\r
 391                                 >\r
 392                         </File>\r
 393                         <File\r
 394                                 RelativePath="glbalignss.cpp"\r
 395                                 >\r
 396                         </File>\r
 397                         <File\r
 398                                 RelativePath="glbalndimer.cpp"\r
 399                                 >\r
 400                         </File>\r
 401                         <File\r
 402                                 RelativePath="globals.cpp"\r
 403                                 >\r
 404                         </File>\r
 405                         <File\r
 406                                 RelativePath="globalslinux.cpp"\r
 407                                 >\r
 408                         </File>\r
 409                         <File\r
 410                                 RelativePath=".\globalsosx.cpp"\r
 411                                 >\r
 412                         </File>\r
 413                         <File\r
 414                                 RelativePath=".\globalsother.cpp"\r
 415                                 >\r
 416                         </File>\r
 417                         <File\r
 418                                 RelativePath="globalswin32.cpp"\r
 419                                 >\r
 420                         </File>\r
 421                         <File\r
 422                                 RelativePath="gonnet.cpp"\r
 423                                 >\r
 424                         </File>\r
 425                         <File\r
 426                                 RelativePath="henikoffweight.cpp"\r
 427                                 >\r
 428                         </File>\r
 429                         <File\r
 430                                 RelativePath="henikoffweightpb.cpp"\r
 431                                 >\r
 432                         </File>\r
 433                         <File\r
 434                                 RelativePath="html.cpp"\r
 435                                 >\r
 436                         </File>\r
 437                         <File\r
 438                                 RelativePath="hydro.cpp"\r
 439                                 >\r
 440                         </File>\r
 441                         <File\r
 442                                 RelativePath="intmath.cpp"\r
 443                                 >\r
 444                         </File>\r
 445                         <File\r
 446                                 RelativePath="local.cpp"\r
 447                                 >\r
 448                         </File>\r
 449                         <File\r
 450                                 RelativePath="main.cpp"\r
 451                                 >\r
 452                         </File>\r
 453                         <File\r
 454                                 RelativePath="makerootmsa.cpp"\r
 455                                 >\r
 456                         </File>\r
 457                         <File\r
 458                                 RelativePath="makerootmsab.cpp"\r
 459                                 >\r
 460                         </File>\r
 461                         <File\r
 462                                 RelativePath=".\maketree.cpp"\r
 463                                 >\r
 464                         </File>\r
 465                         <File\r
 466                                 RelativePath="mhack.cpp"\r
 467                                 >\r
 468                         </File>\r
 469                         <File\r
 470                                 RelativePath="mpam200.cpp"\r
 471                                 >\r
 472                         </File>\r
 473                         <File\r
 474                                 RelativePath="msa.cpp"\r
 475                                 >\r
 476                         </File>\r
 477                         <File\r
 478                                 RelativePath="msa2.cpp"\r
 479                                 >\r
 480                         </File>\r
 481                         <File\r
 482                                 RelativePath="msadistkimura.cpp"\r
 483                                 >\r
 484                         </File>\r
 485                         <File\r
 486                                 RelativePath="msf.cpp"\r
 487                                 >\r
 488                         </File>\r
 489                         <File\r
 490                                 RelativePath="muscle.cpp"\r
 491                                 >\r
 492                         </File>\r
 493                         <File\r
 494                                 RelativePath="muscleout.cpp"\r
 495                                 >\r
 496                         </File>\r
 497                         <File\r
 498                                 RelativePath="nucmx.cpp"\r
 499                                 >\r
 500                         </File>\r
 501                         <File\r
 502                                 RelativePath="nwdasimple.cpp"\r
 503                                 >\r
 504                         </File>\r
 505                         <File\r
 506                                 RelativePath="nwdasimple2.cpp"\r
 507                                 >\r
 508                         </File>\r
 509                         <File\r
 510                                 RelativePath="nwdasmall.cpp"\r
 511                                 >\r
 512                         </File>\r
 513                         <File\r
 514                                 RelativePath="nwrec.cpp"\r
 515                                 >\r
 516                         </File>\r
 517                         <File\r
 518                                 RelativePath="nwsmall.cpp"\r
 519                                 >\r
 520                         </File>\r
 521                         <File\r
 522                                 RelativePath="objscore.cpp"\r
 523                                 >\r
 524                         </File>\r
 525                         <File\r
 526                                 RelativePath="objscore2.cpp"\r
 527                                 >\r
 528                         </File>\r
 529                         <File\r
 530                                 RelativePath="objscoreda.cpp"\r
 531                                 >\r
 532                         </File>\r
 533                         <File\r
 534                                 RelativePath="onexception.cpp"\r
 535                                 >\r
 536                         </File>\r
 537                         <File\r
 538                                 RelativePath="options.cpp"\r
 539                                 >\r
 540                         </File>\r
 541                         <File\r
 542                                 RelativePath="outweights.cpp"\r
 543                                 >\r
 544                         </File>\r
 545                         <File\r
 546                                 RelativePath="pam200mafft.cpp"\r
 547                                 >\r
 548                         </File>\r
 549                         <File\r
 550                                 RelativePath="params.cpp"\r
 551                                 >\r
 552                         </File>\r
 553                         <File\r
 554                                 RelativePath="phy.cpp"\r
 555                                 >\r
 556                         </File>\r
 557                         <File\r
 558                                 RelativePath="phy2.cpp"\r
 559                                 >\r
 560                         </File>\r
 561                         <File\r
 562                                 RelativePath="phy3.cpp"\r
 563                                 >\r
 564                         </File>\r
 565                         <File\r
 566                                 RelativePath="phy4.cpp"\r
 567                                 >\r
 568                         </File>\r
 569                         <File\r
 570                                 RelativePath="phyfromclust.cpp"\r
 571                                 >\r
 572                         </File>\r
 573                         <File\r
 574                                 RelativePath="phyfromfile.cpp"\r
 575                                 >\r
 576                         </File>\r
 577                         <File\r
 578                                 RelativePath="physeq.cpp"\r
 579                                 >\r
 580                         </File>\r
 581                         <File\r
 582                                 RelativePath="phytofile.cpp"\r
 583                                 >\r
 584                         </File>\r
 585                         <File\r
 586                                 RelativePath="posgap.cpp"\r
 587                                 >\r
 588                         </File>\r
 589                         <File\r
 590                                 RelativePath="ppscore.cpp"\r
 591                                 >\r
 592                         </File>\r
 593                         <File\r
 594                                 RelativePath="profdb.cpp"\r
 595                                 >\r
 596                         </File>\r
 597                         <File\r
 598                                 RelativePath="profile.cpp"\r
 599                                 >\r
 600                         </File>\r
 601                         <File\r
 602                                 RelativePath="profilefrommsa.cpp"\r
 603                                 >\r
 604                         </File>\r
 605                         <File\r
 606                                 RelativePath="progalign.cpp"\r
 607                                 >\r
 608                         </File>\r
 609                         <File\r
 610                                 RelativePath="progress.cpp"\r
 611                                 >\r
 612                         </File>\r
 613                         <File\r
 614                                 RelativePath="progressivealign.cpp"\r
 615                                 >\r
 616                         </File>\r
 617                         <File\r
 618                                 RelativePath="pwpath.cpp"\r
 619                                 >\r
 620                         </File>\r
 621                         <File\r
 622                                 RelativePath="readmx.cpp"\r
 623                                 >\r
 624                         </File>\r
 625                         <File\r
 626                                 RelativePath="realigndiffs.cpp"\r
 627                                 >\r
 628                         </File>\r
 629                         <File\r
 630                                 RelativePath="realigndiffse.cpp"\r
 631                                 >\r
 632                         </File>\r
 633                         <File\r
 634                                 RelativePath="refine.cpp"\r
 635                                 >\r
 636                         </File>\r
 637                         <File\r
 638                                 RelativePath="refinehoriz.cpp"\r
 639                                 >\r
 640                         </File>\r
 641                         <File\r
 642                                 RelativePath="refinesubfams.cpp"\r
 643                                 >\r
 644                         </File>\r
 645                         <File\r
 646                                 RelativePath="refinetree.cpp"\r
 647                                 >\r
 648                         </File>\r
 649                         <File\r
 650                                 RelativePath="refinetreee.cpp"\r
 651                                 >\r
 652                         </File>\r
 653                         <File\r
 654                                 RelativePath="refinevert.cpp"\r
 655                                 >\r
 656                         </File>\r
 657                         <File\r
 658                                 RelativePath="refinew.cpp"\r
 659                                 >\r
 660                         </File>\r
 661                         <File\r
 662                                 RelativePath="savebest.cpp"\r
 663                                 >\r
 664                         </File>\r
 665                         <File\r
 666                                 RelativePath=".\scoredist.cpp"\r
 667                                 >\r
 668                         </File>\r
 669                         <File\r
 670                                 RelativePath="scoregaps.cpp"\r
 671                                 >\r
 672                         </File>\r
 673                         <File\r
 674                                 RelativePath="scorehistory.cpp"\r
 675                                 >\r
 676                         </File>\r
 677                         <File\r
 678                                 RelativePath="scorepp.cpp"\r
 679                                 >\r
 680                         </File>\r
 681                         <File\r
 682                                 RelativePath="seq.cpp"\r
 683                                 >\r
 684                         </File>\r
 685                         <File\r
 686                                 RelativePath="seqvect.cpp"\r
 687                                 >\r
 688                         </File>\r
 689                         <File\r
 690                                 RelativePath="setblosumweights.cpp"\r
 691                                 >\r
 692                         </File>\r
 693                         <File\r
 694                                 RelativePath="setgscweights.cpp"\r
 695                                 >\r
 696                         </File>\r
 697                         <File\r
 698                                 RelativePath="setnewhandler.cpp"\r
 699                                 >\r
 700                         </File>\r
 701                         <File\r
 702                                 RelativePath="spfast.cpp"\r
 703                                 >\r
 704                         </File>\r
 705                         <File\r
 706                                 RelativePath="sptest.cpp"\r
 707                                 >\r
 708                         </File>\r
 709                         <File\r
 710                                 RelativePath="stabilize.cpp"\r
 711                                 >\r
 712                         </File>\r
 713                         <File\r
 714                                 RelativePath="subfam.cpp"\r
 715                                 >\r
 716                         </File>\r
 717                         <File\r
 718                                 RelativePath="subfams.cpp"\r
 719                                 >\r
 720                         </File>\r
 721                         <File\r
 722                                 RelativePath="sw.cpp"\r
 723                                 >\r
 724                         </File>\r
 725                         <File\r
 726                                 RelativePath="termgaps.cpp"\r
 727                                 >\r
 728                         </File>\r
 729                         <File\r
 730                                 RelativePath="textfile.cpp"\r
 731                                 >\r
 732                         </File>\r
 733                         <File\r
 734                                 RelativePath="threewaywt.cpp"\r
 735                                 >\r
 736                         </File>\r
 737                         <File\r
 738                                 RelativePath=".\tomhydro.cpp"\r
 739                                 >\r
 740                         </File>\r
 741                         <File\r
 742                                 RelativePath="traceback.cpp"\r
 743                                 >\r
 744                         </File>\r
 745                         <File\r
 746                                 RelativePath="tracebackopt.cpp"\r
 747                                 >\r
 748                         </File>\r
 749                         <File\r
 750                                 RelativePath="tracebacksw.cpp"\r
 751                                 >\r
 752                         </File>\r
 753                         <File\r
 754                                 RelativePath="treefrommsa.cpp"\r
 755                                 >\r
 756                         </File>\r
 757                         <File\r
 758                                 RelativePath="typetostr.cpp"\r
 759                                 >\r
 760                         </File>\r
 761                         <File\r
 762                                 RelativePath="upgma2.cpp"\r
 763                                 >\r
 764                         </File>\r
 765                         <File\r
 766                                 RelativePath="usage.cpp"\r
 767                                 >\r
 768                         </File>\r
 769                         <File\r
 770                                 RelativePath="validateids.cpp"\r
 771                                 >\r
 772                         </File>\r
 773                         <File\r
 774                                 RelativePath="vtml2.cpp"\r
 775                                 >\r
 776                         </File>\r
 777                         <File\r
 778                                 RelativePath="writescorefile.cpp"\r
 779                                 >\r
 780                         </File>\r
 781                 </Filter>\r
 782                 <Filter\r
 783                         Name="Header Files"\r
 784                         Filter="h;hpp;hxx;hm;inl;inc"\r
 785                         >\r
 786                         <File\r
 787                                 RelativePath="alpha.h"\r
 788                                 >\r
 789                         </File>\r
 790                         <File\r
 791                                 RelativePath="clust.h"\r
 792                                 >\r
 793                         </File>\r
 794                         <File\r
 795                                 RelativePath="cluster.h"\r
 796                                 >\r
 797                         </File>\r
 798                         <File\r
 799                                 RelativePath="clustset.h"\r
 800                                 >\r
 801                         </File>\r
 802                         <File\r
 803                                 RelativePath="clustsetdf.h"\r
 804                                 >\r
 805                         </File>\r
 806                         <File\r
 807                                 RelativePath="clustsetmsa.h"\r
 808                                 >\r
 809                         </File>\r
 810                         <File\r
 811                                 RelativePath="consts.h"\r
 812                                 >\r
 813                         </File>\r
 814                         <File\r
 815                                 RelativePath="diaglist.h"\r
 816                                 >\r
 817                         </File>\r
 818                         <File\r
 819                                 RelativePath="distcalc.h"\r
 820                                 >\r
 821                         </File>\r
 822                         <File\r
 823                                 RelativePath="distfunc.h"\r
 824                                 >\r
 825                         </File>\r
 826                         <File\r
 827                                 RelativePath="dpregionlist.h"\r
 828                                 >\r
 829                         </File>\r
 830                         <File\r
 831                                 RelativePath="dpreglist.h"\r
 832                                 >\r
 833                         </File>\r
 834                         <File\r
 835                                 RelativePath="edgelist.h"\r
 836                                 >\r
 837                         </File>\r
 838                         <File\r
 839                                 RelativePath="enumopts.h"\r
 840                                 >\r
 841                         </File>\r
 842                         <File\r
 843                                 RelativePath="enums.h"\r
 844                                 >\r
 845                         </File>\r
 846                         <File\r
 847                                 RelativePath="estring.h"\r
 848                                 >\r
 849                         </File>\r
 850                         <File\r
 851                                 RelativePath="gapscoredimer.h"\r
 852                                 >\r
 853                         </File>\r
 854                         <File\r
 855                                 RelativePath="gonnet.h"\r
 856                                 >\r
 857                         </File>\r
 858                         <File\r
 859                                 RelativePath="intmath.h"\r
 860                                 >\r
 861                         </File>\r
 862                         <File\r
 863                                 RelativePath="msa.h"\r
 864                                 >\r
 865                         </File>\r
 866                         <File\r
 867                                 RelativePath="msadist.h"\r
 868                                 >\r
 869                         </File>\r
 870                         <File\r
 871                                 RelativePath="muscle.h"\r
 872                                 >\r
 873                         </File>\r
 874                         <File\r
 875                                 RelativePath="objscore.h"\r
 876                                 >\r
 877                         </File>\r
 878                         <File\r
 879                                 RelativePath="params.h"\r
 880                                 >\r
 881                         </File>\r
 882                         <File\r
 883                                 RelativePath="profile.h"\r
 884                                 >\r
 885                         </File>\r
 886                         <File\r
 887                                 RelativePath="scorehistory.h"\r
 888                                 >\r
 889                         </File>\r
 890                         <File\r
 891                                 RelativePath="seq.h"\r
 892                                 >\r
 893                         </File>\r
 894                         <File\r
 895                                 RelativePath="seqvect.h"\r
 896                                 >\r
 897                         </File>\r
 898                         <File\r
 899                                 RelativePath="textfile.h"\r
 900                                 >\r
 901                         </File>\r
 902                         <File\r
 903                                 RelativePath="timing.h"\r
 904                                 >\r
 905                         </File>\r
 906                         <File\r
 907                                 RelativePath="tree.h"\r
 908                                 >\r
 909                         </File>\r
 910                         <File\r
 911                                 RelativePath="types.h"\r
 912                                 >\r
 913                         </File>\r
 914                         <File\r
 915                                 RelativePath="unixio.h"\r
 916                                 >\r
 917                         </File>\r
 918                 </Filter>\r
 919         </Files>\r
 920         <Globals>\r
 921         </Globals>\r
 922 </VisualStudioProject>\r